Information for 9-TGGVACTADGCAA (Motif 6)

A C G T A C T G A C T G T A G C C G T A A T G C A G C T C G T A C A G T A T C G A G T C C G T A C G T A
Reverse Opposite:
C G A T A C G T A C T G A T G C G C T A A C G T C T G A A T C G A C G T A C T G A G T C A G T C C G T A
p-value:1e-10
log p-value:-2.390e+01
Information Content per bp:1.850
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets69.0 +/- 23.1bp
Average Position of motif in Background34.6 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGGVACTADGCAA-
TGGCACCATGCCAA
 A C G T A C T G A C T G T A G C C G T A A T G C A G C T C G T A C A G T A T C G A G T C C G T A C G T A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGGVACTADGCAA-
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T A C T G A C T G T A G C C G T A A T G C A G C T C G T A C A G T A T C G A G T C C G T A C G T A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGGVACTADGCAA-
TGGCAGNCTGCCAG
 A C G T A C T G A C T G T A G C C G T A A T G C A G C T C G T A C A G T A T C G A G T C C G T A C G T A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.58
Offset:5
Orientation:forward strand
Alignment:TGGVACTADGCAA--
-----ATATGCAAAT
 A C G T A C T G A C T G T A G C C G T A A T G C A G C T C G T A C A G T A T C G A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TGGVACTADGCAA---
----AATATGCAAATT
 A C G T A C T G A C T G T A G C C G T A A T G C A G C T C G T A C A G T A T C G A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TGGVACTADGCAA--
-----TTATGCAAAT
 A C G T A C T G A C T G T A G C C G T A A T G C A G C T C G T A C A G T A T C G A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TGGVACTADGCAA-----
-----ATATGCAAATNNN
 A C G T A C T G A C T G T A G C C G T A A T G C A G C T C G T A C A G T A T C G A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

POU3F4/MA0789.1/Jaspar

Match Rank:8
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TGGVACTADGCAA--
------TATGCAAAT
 A C G T A C T G A C T G T A G C C G T A A T G C A G C T C G T A C A G T A T C G A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TGGVACTADGCAA--
------TATGCAAAT
 A C G T A C T G A C T G T A G C C G T A A T G C A G C T C G T A C A G T A T C G A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TGGVACTADGCAA------
---TTGTATGCAAATTAGA
 A C G T A C T G A C T G T A G C C G T A A T G C A G C T C G T A C A G T A T C G A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A