Information for 6-CACAVCCTGCAGG (Motif 2)

A G T C T C G A G T A C G T C A T A G C A G T C A G T C A C G T A C T G A G T C C G T A A C T G A C T G
Reverse Opposite:
A G T C G T A C C G A T A C T G A G T C C G T A A C T G A C T G A T C G C A G T A C T G A C G T A C T G
p-value:1e-17
log p-value:-3.948e+01
Information Content per bp:1.846
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif56.6
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets46.3 +/- 17.9bp
Average Position of motif in Background47.8 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CACAVCCTGCAGG-
--CCCCCTGCTGTG
 A G T C T C G A G T A C G T C A T A G C A G T C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CACAVCCTGCAGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T C G A G T A C G T C A T A G C A G T C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CACAVCCTGCAGG--
GGCCYCCTGCTGDGH
 A G T C T C G A G T A C G T C A T A G C A G T C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CACAVCCTGCAGG
ACCACATCCTGT---
 A C G T A C G T A G T C T C G A G T A C G T C A T A G C A G T C A G T C A C G T A C T G A G T C C G T A A C T G A C T G
T G C A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A G T C C A G T A T C G A G C T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CACAVCCTGCAGG
SNGCACCTGCHS-
 A G T C T C G A G T A C G T C A T A G C A G T C A G T C A C G T A C T G A G T C C G T A A C T G A C T G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CACAVCCTGCAGG---
-CCACACAGCAGGAGA
 A G T C T C G A G T A C G T C A T A G C A G T C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CACAVCCTGCAGG
GGCCACACCCAN----
 A C G T A C G T A C G T A G T C T C G A G T A C G T C A T A G C A G T C A G T C A C G T A C T G A G T C C G T A A C T G A C T G
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CACAVCCTGCAGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C T C G A G T A C G T C A T A G C A G T C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CACAVCCTGCAGG---
-CCACACAGCAGGAGA
 A G T C T C G A G T A C G T C A T A G C A G T C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CACAVCCTGCAGG
---DCTCAGCAGG
 A G T C T C G A G T A C G T C A T A G C A G T C A G T C A C G T A C T G A G T C C G T A A C T G A C T G
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G