Information for 8-AGTAATGGCA (Motif 13)

C G T A T A C G A G C T G T C A T G C A G A C T A C T G T C A G G T A C G T C A
Reverse Opposite:
C A G T C A T G A G T C G T A C C T G A A C G T C A G T C T G A A T G C C G A T
p-value:1e-9
log p-value:-2.125e+01
Information Content per bp:1.603
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.97%
Number of Background Sequences with motif309.4
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets52.0 +/- 22.5bp
Average Position of motif in Background52.1 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARX1/MA0875.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGTAATGGCA
-NTAATTGN-
 C G T A T A C G A G C T G T C A T G C A G A C T A C T G T C A G G T A C G T C A
A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGTAATGGCA
-CTAATKGV-
 C G T A T A C G A G C T G T C A T G C A G A C T A C T G T C A G G T A C G T C A
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T

MEOX2/MA0706.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGTAATGGCA
AGTAATTAAC
 C G T A T A C G A G C T G T C A T G C A G A C T A C T G T C A G G T A C G T C A
C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGTAATGGCA
AATAATT---
 C G T A T A C G A G C T G T C A T G C A G A C T A C T G T C A G G T A C G T C A
G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGTAATGGCA---
TTTATTAATTGCNNGN
 A C G T A C G T A C G T C G T A T A C G A G C T G T C A T G C A G A C T A C T G T C A G G T A C G T C A A C G T A C G T A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

PDX1/MA0132.2/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGTAATGGCA
-CTAATTAN-
 C G T A T A C G A G C T G T C A T G C A G A C T A C T G T C A G G T A C G T C A
A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T G A A T G C A C G T

BSX/MA0876.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGTAATGGCA
-NTAATTGG-
 C G T A T A C G A G C T G T C A T G C A G A C T A C T G T C A G G T A C G T C A
A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGTAATGGCA
GCTAATTAAC
 C G T A T A C G A G C T G T C A T G C A G A C T A C T G T C A G G T A C G T C A
T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C

Dlx4/MA0881.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGTAATGGCA
-NTAATTGN-
 C G T A T A C G A G C T G T C A T G C A G A C T A C T G T C A G G T A C G T C A
A C G T C A T G C G A T T C G A C G T A C A G T C A G T C T A G A T C G A C G T

Dlx3/MA0880.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGTAATGGCA
-NTAATTGN-
 C G T A T A C G A G C T G T C A T G C A G A C T A C T G T C A G G T A C G T C A
A C G T C A T G C G A T T C G A C G T A C A G T C A G T C T A G A T C G A C G T