Information for 7-GGTGGCAGTAKTG (Motif 4)

A C T G A C T G A C G T A C T G A C T G A G T C C G T A C T A G C G A T C T G A C A G T C G A T C A T G
Reverse Opposite:
G A T C C G T A G T C A A G C T C G T A A G T C A C G T A C T G A G T C A G T C G T C A A G T C A G T C
p-value:1e-16
log p-value:-3.849e+01
Information Content per bp:1.820
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets41.3 +/- 13.9bp
Average Position of motif in Background33.0 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGTAKTG
GGTTGGCAT-----
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C T A G C G A T C T G A C A G T C G A T C A T G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAGTAKTG
NGTAGGTTGGCATNNN--
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C T A G C G A T C T G A C A G T C G A T C A T G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAGTAKTG
TNNNNGGTGTCATNTNT-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C T A G C G A T C T G A C A G T C G A T C A T G
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCAGTAKTG
AGGTGTCA------
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C T A G C G A T C T G A C A G T C G A T C A T G
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGTAKTG
CTTGGCAA-----
 A C T G A C T G A C G T A C T G A C T G A G T C C G T A C T A G C G A T C T G A C A G T C G A T C A T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGTAKTG
TNNGGGCAG-----
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C T A G C G A T C T G A C A G T C G A T C A T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGTGGCAGTAKTG
--TGGCAGTTGN-
 A C T G A C T G A C G T A C T G A C T G A G T C C G T A C T A G C G A T C T G A C A G T C G A T C A T G
A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGTAKTG
NGTGGGCAT-----
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C T A G C G A T C T G A C A G T C G A T C A T G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.59
Offset:-9
Orientation:reverse strand
Alignment:---------GGTGGCAGTAKTG
TGGCCACCAGGTGGCACTNT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C T A G C G A T C T G A C A G T C G A T C A T G
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGTAKTG
NTTGGCANN----
 A C T G A C T G A C G T A C T G A C T G A G T C C G T A C T A G C G A T C T G A C A G T C G A T C A T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T