Information for 3-GAGGSCGCTGYSKRSC (Motif 3)

A C T G C G T A A C T G A C T G A T C G A G T C A C T G A G T C A C G T A T C G A G C T A T G C A C G T C T A G A T G C G T A C
Reverse Opposite:
A C T G A T C G A G T C T G C A A T C G T C G A A T G C C G T A A C T G A G T C A C T G A T G C A G T C A G T C A C G T A G T C
p-value:1e-18
log p-value:-4.242e+01
Information Content per bp:1.841
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.6 +/- 16.8bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAGGSCGCTGYSKRSC
CAGGCCNNGGCCNN--
 A C T G C G T A A C T G A C T G A T C G A G T C A C T G A G T C A C G T A T C G A G C T A T G C A C G T C T A G A T G C G T A C
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGGSCGCTGYSKRSC
NCGCGGACGTTG------
 A C G T A C G T A C T G C G T A A C T G A C T G A T C G A G T C A C T G A G T C A C G T A T C G A G C T A T G C A C G T C T A G A T G C G T A C
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GAGGSCGCTGYSKRSC
------GCTGTG----
 A C T G C G T A A C T G A C T G A T C G A G T C A C T G A G T C A C G T A T C G A G C T A T G C A C G T C T A G A T G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GAGGSCGCTGYSKRSC
-----NGCTN------
 A C T G C G T A A C T G A C T G A T C G A G T C A C T G A G T C A C G T A T C G A G C T A T G C A C G T C T A G A T G C G T A C
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GAGGSCGCTGYSKRSC
RGKGGGCGGAGC-----
 A C G T A C T G C G T A A C T G A C T G A T C G A G T C A C T G A G T C A C G T A T C G A G C T A T G C A C G T C T A G A T G C G T A C
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:6
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GAGGSCGCTGYSKRSC
NNVDGGGYGGGGCYN---
 A C G T A C G T A C T G C G T A A C T G A C T G A T C G A G T C A C T G A G T C A C G T A T C G A G C T A T G C A C G T C T A G A T G C G T A C
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A A C G T A C G T A C G T

Klf12/MA0742.1/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GAGGSCGCTGYSKRSC
NANAAGGGCGTGGTC----
 A C G T A C G T A C G T A C T G C G T A A C T G A C T G A T C G A G T C A C T G A G T C A C G T A T C G A G C T A T G C A C G T C T A G A T G C G T A C
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GAGGSCGCTGYSKRSC
NNAGCAGCTGCT----
 A C T G C G T A A C T G A C T G A T C G A G T C A C T G A G T C A C G T A T C G A G C T A T G C A C G T C T A G A T G C G T A C
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T

ZBTB7A/MA0750.1/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GAGGSCGCTGYSKRSC
TCGGTGGTCGCN-------
 A C G T A C G T A C G T A C T G C G T A A C T G A C T G A T C G A G T C A C T G A G T C A C G T A T C G A G C T A T G C A C G T C T A G A T G C G T A C
A C G T G T A C C A T G A C T G C A G T T A C G C T A G C A G T A G T C A T C G A G T C T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0039.1_Klf7_1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GAGGSCGCTGYSKRSC
NNAGGGGCGGGGTNNA--
 A C G T A C G T A C T G C G T A A C T G A C T G A T C G A G T C A C T G A G T C A C G T A T C G A G C T A T G C A C G T C T A G A T G C G T A C
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A A C G T A C G T