Information for 10-GCGCTGCGGGGCYCGG (Motif 15)

A T C G A T G C C A T G A G T C A G C T A T C G A G T C T C A G A C T G C T A G A C T G T A G C A G C T T A G C C A T G A T C G
Reverse Opposite:
A T G C G T A C A T C G T C G A A T C G T G A C G A T C G T A C A G T C A C T G A T G C T C G A A C T G G T A C A T C G T A G C
p-value:1e-8
log p-value:-1.878e+01
Information Content per bp:1.708
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.31%
Number of Background Sequences with motif456.2
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets48.0 +/- 24.2bp
Average Position of motif in Background52.5 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCGCTGCGGGGCYCGG
DCHCAGCAGGRGGCC-
 A T C G A T G C C A T G A G T C A G C T A T C G A G T C T C A G A C T G C T A G A C T G T A G C A G C T T A G C C A T G A T C G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCGCTGCGGGGCYCGG
NCGCAGCGGGGGGTC-
 A T C G A T G C C A T G A G T C A G C T A T C G A G T C T C A G A C T G C T A G A C T G T A G C A G C T T A G C C A T G A T C G
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCGCTGCGGGGCYCGG
NCNCAGCGGGGGGTC-
 A T C G A T G C C A T G A G T C A G C T A T C G A G T C T C A G A C T G C T A G A C T G T A G C A G C T T A G C C A T G A T C G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCGCTGCGGGGCYCGG
NNGCNCTGCGCGGC----
 A C G T A C G T A T C G A T G C C A T G A G T C A G C T A T C G A G T C T C A G A C T G C T A G A C T G T A G C A G C T T A G C C A T G A T C G
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCGCTGCGGGGCYCGG
DCTCAGCAGG------
 A T C G A T G C C A T G A G T C A G C T A T C G A G T C T C A G A C T G C T A G A C T G T A G C A G C T T A G C C A T G A T C G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCGCTGCGGGGCYCGG
-CACAGCGGGGGGTC-
 A T C G A T G C C A T G A G T C A G C T A T C G A G T C T C A G A C T G C T A G A C T G T A G C A G C T T A G C C A T G A T C G
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCGCTGCGGGGCYCGG
-CACAGCAGGGGG---
 A T C G A T G C C A T G A G T C A G C T A T C G A G T C T C A G A C T G C T A G A C T G T A G C A G C T T A G C C A T G A T C G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GCGCTGCGGGGCYCGG--
----GGCGGGGGCGGGGG
 A T C G A T G C C A T G A G T C A G C T A T C G A G T C T C A G A C T G C T A G A C T G T A G C A G C T T A G C C A T G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCGCTGCGGGGCYCGG
CCACACAGCAGGAGA---
 A C G T A C G T A T C G A T G C C A T G A G T C A G C T A T C G A G T C T C A G A C T G C T A G A C T G T A G C A G C T T A G C C A T G A T C G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCGCTGCGGGGCYCGG
GAGCACAGCAGGACA---
 A C G T A C G T A T C G A T G C C A T G A G T C A G C T A T C G A G T C T C A G A C T G C T A G A C T G T A G C A G C T T A G C C A T G A T C G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T