Information for 3-CAAGGAGAGTGGG (Motif 6)

G T A C C G T A C G T A A C T G A C T G C G T A C T A G C G T A A C T G A C G T A C T G A C T G A C T G
Reverse Opposite:
G T A C A G T C A G T C C G T A A G T C A C G T A G T C A C G T A G T C G T A C A C G T A C G T A C T G
p-value:1e-10
log p-value:-2.524e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.6 +/- 31.0bp
Average Position of motif in Background77.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0114.1_Egr1_2/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CAAGGAGAGTGGG-----
--TGCGGAGTGGGACTGG
 G T A C C G T A C G T A A C T G A C T G C G T A C T A G C G T A A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAAGGAGAGTGGG
AGAAACGAAAGT---
 A C G T A C G T G T A C C G T A C G T A A C T G A C T G C G T A C T A G C G T A A C T G A C G T A C T G A C T G A C T G
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAAGGAGAGTGGG
AGAAAGTGAAAGTGA-
 A C G T A C G T A C G T G T A C C G T A C G T A A C T G A C T G C G T A C T A G C G T A A C T G A C G T A C T G A C T G A C T G
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAAGGAGAGTGGG
NNNACCGAGAGTNNN
 A C G T A C G T G T A C C G T A C G T A A C T G A C T G C G T A C T A G C G T A A C T G A C G T A C T G A C T G A C T G
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAAGGAGAGTGGG
-AAGGCAAGTGT-
 G T A C C G T A C G T A A C T G A C T G C G T A C T A G C G T A A C T G A C G T A C T G A C T G A C T G
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAAGGAGAGTGGG-
----TTRAGTGSYK
 G T A C C G T A C G T A A C T G A C T G C G T A C T A G C G T A A C T G A C G T A C T G A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAAGGAGAGTGGG
GAAAGTGAAAGT---
 A C G T A C G T G T A C C G T A C G T A A C T G A C T G C G T A C T A G C G T A A C T G A C G T A C T G A C T G A C T G
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CAAGGAGAGTGGG----
-----NGCGTGGGCGGR
 G T A C C G T A C G T A A C T G A C T G C G T A C T A G C G T A A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A T C A C T G A C G T C T A G A C T G A C T G G A T C C T A G C A T G C T A G

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAGAGTGGG
TTGACCGAGAATTCC
 A C G T A C G T G T A C C G T A C G T A A C T G A C T G C G T A C T A G C G T A A C T G A C G T A C T G A C T G A C T G
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

KLF13/MA0657.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAAGGAGAGTGGG--
CAAAAAGGGGCGTGGCAT
 A C G T A C G T A C G T G T A C C G T A C G T A A C T G A C T G C G T A C T A G C G T A A C T G A C G T A C T G A C T G A C T G A C G T A C G T
G T A C G T C A G T C A G T C A C T G A C T G A C A T G C T A G A C T G C T A G G A T C T A C G A G C T C A T G C A T G G A T C G T C A G A C T