Information for 5-TTGGAAWGAGTSCATC (Motif 13)

A G C T A C G T A C T G A C T G C G T A G C T A C G A T A C T G C G T A A C T G A C G T A T C G A G T C C T G A A C G T G A T C
Reverse Opposite:
C A T G C G T A A G C T A C T G A T C G C G T A A G T C A C G T A G T C C G A T C A G T C G A T A G T C A G T C C G T A C T G A
p-value:1e-9
log p-value:-2.178e+01
Information Content per bp:1.830
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.6 +/- 21.0bp
Average Position of motif in Background26.3 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TTGGAAWGAGTSCATC--
--GGCAAAAGTCCAATAA
 A G C T A C G T A C T G A C T G C G T A G C T A C G A T A C T G C G T A A C T G A C G T A T C G A G T C C T G A A C G T G A T C A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TTGGAAWGAGTSCATC--
NANTGGAAAAANTGAGTCAN
 A C G T A C G T A G C T A C G T A C T G A C T G C G T A G C T A C G A T A C T G C G T A A C T G A C G T A T C G A G T C C T G A A C G T G A T C A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TTGGAAWGAGTSCATC
-----TTAAGTGCTT-
 A G C T A C G T A C T G A C T G C G T A G C T A C G A T A C T G C G T A A C T G A C G T A T C G A G T C C T G A A C G T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:TTGGAAWGAGTSCATC
-----TTGAGTGSTT-
 A G C T A C G T A C T G A C T G C G T A G C T A C G A T A C T G C G T A A C T G A C G T A T C G A G T C C T G A A C G T G A T C
A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TTGGAAWGAGTSCATC
-----TTRAGTGSYK-
 A G C T A C G T A C T G A C T G C G T A G C T A C G A T A C T G C G T A A C T G A C G T A T C G A G T C C T G A A C G T G A T C
A C G T A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TTGGAAWGAGTSCATC
----CTTGAGTGGCT-
 A G C T A C G T A C T G A C T G C G T A G C T A C G A T A C T G C G T A A C T G A C G T A T C G A G T C C T G A A C G T G A T C
A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TTGGAAWGAGTSCATC
GGGGTCAAAGTCCAAT
 A G C T A C G T A C T G A C T G C G T A G C T A C G A T A C T G C G T A A C T G A C G T A T C G A G T C C T G A A C G T G A T C
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0096.1_Zfp187_1/Jaspar

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TTGGAAWGAGTSCATC-
---TTATTAGTACATAN
 A G C T A C G T A C T G A C T G C G T A G C T A C G A T A C T G C G T A A C T G A C G T A T C G A G T C C T G A A C G T G A T C A C G T
A C G T A C G T A C G T C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-TTGGAAWGAGTSCATC
GTAGGGCAAAGGTCA--
 A C G T A G C T A C G T A C T G A C T G C G T A G C T A C G A T A C T G C G T A A C T G A C G T A T C G A G T C C T G A A C G T G A T C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T

TEAD3/MA0808.1/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TTGGAAWGAGTSCATC
-TGGAATGT-------
 A G C T A C G T A C T G A C T G C G T A G C T A C G A T A C T G C G T A A C T G A C G T A T C G A G T C C T G A A C G T G A T C
A C G T G C A T C T A G A C T G G C T A C G T A A C G T A C T G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T