Information for 5-GAGATTTTGTTTG (Motif 5)

C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C G T A C T G
Reverse Opposite:
A G T C G T C A C T G A C G T A A G T C C G T A G T C A C G T A G T C A A C G T A G T C A C G T A G T C
p-value:1e-11
log p-value:-2.674e+01
Information Content per bp:1.935
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.8 +/- 22.9bp
Average Position of motif in Background37.1 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0016.1_Foxj1_1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGATTTTGTTTG----
-NNNNTTTGTTTACNNT
 C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGATTTTGTTTG-----
--NNTTTTGTTTTGATNT
 C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

Gfi1/MA0038.1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGATTTTGTTTG
CNGTGATTTN-----
 A C G T A C G T C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C G T A C T G
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GAGATTTTGTTTG------
----CTTTGTTTACTTTTN
 C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C A T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A G T C G A C T A G C T G C A T C G A T C A T G

PB0116.1_Elf3_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAGATTTTGTTTG---
GNATTTTTTTTTTGANC
 A C G T C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C G T A C T G A C G T A C G T A C G T
C T A G G C T A C T G A A C G T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C A G T C A T G T G C A T C G A G T A C

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAGATTTTGTTTG---
NNAATTTTATTGGNTN
 C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C G T A C T G A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

Foxj3/MA0851.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGATTTTGTTTG------
--NNNTTTGTTTACNTTNN
 C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGATTTTGTTTG------
--NNNTTTGTTTACNTTNN
 C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GAGATTTTGTTTG
-----ATTGTT--
 C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C G T A C T G
A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAGATTTTGTTTG
---CCTTTGTTTT
 C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G C T A C G T A C T G
A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T