Information for 4-CTKCSWTAARTGG (Motif 3)

A G T C A C G T A C T G A G T C A T G C C G A T A C G T C G T A C G T A C T G A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A G C T A C G T A C G T G T C A G C T A A T C G A C T G G T A C C G T A A C T G
p-value:1e-13
log p-value:-3.088e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.0 +/- 18.7bp
Average Position of motif in Background42.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CTKCSWTAARTGG-----
-NTNNTTAAGTGGNTNAN
 A G T C A C G T A C T G A G T C A T G C C G A T A C G T C G T A C G T A C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PB0078.1_Srf_1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CTKCSWTAARTGG--
-TNCCATATATGGNA
 A G T C A C G T A C T G A G T C A T G C C G A T A C G T C G T A C G T A C T G A A C G T A C T G A C T G A C G T A C G T
A C G T C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:CTKCSWTAARTGG-
-----TTAAGTGGT
 A G T C A C G T A C T G A G T C A T G C C G A T A C G T C G T A C G T A C T G A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:CTKCSWTAARTGG-
-----TTAAGTGGN
 A G T C A C G T A C T G A G T C A T G C C G A T A C G T C G T A C G T A C T G A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTKCSWTAARTGG
-TNCCATATATGG
 A G T C A C G T A C T G A G T C A T G C C G A T A C G T C G T A C G T A C T G A A C G T A C T G A C T G
A C G T C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CTKCSWTAARTGG-----
-NTNNTTAAGTGGTTANN
 A G T C A C G T A C T G A G T C A T G C C G A T A C G T C G T A C G T A C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

MF0008.1_MADS_class/Jaspar

Match Rank:7
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTKCSWTAARTGG
---CCATATATGG
 A G T C A C G T A C T G A G T C A T G C C G A T A C G T C G T A C G T A C T G A A C G T A C T G A C T G
A C G T A C G T A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CTKCSWTAARTGG-
----NTCAAGTGGN
 A G T C A C G T A C T G A G T C A T G C C G A T A C G T C G T A C G T A C T G A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

ISL2/MA0914.1/Jaspar

Match Rank:9
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CTKCSWTAARTGG
-----TTAAGTGC
 A G T C A C G T A C T G A G T C A T G C C G A T A C G T C G T A C G T A C T G A A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CTKCSWTAARTGG-
----GCTAATTGCT
 A G T C A C G T A C T G A G T C A T G C C G A T A C G T C G T A C G T A C T G A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T