Information for 6-CRGAGGCCGA (Motif 19)

A G T C C T G A A T C G C G T A A C T G A T C G A G T C G T A C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A C T G A T G C G T A C C G A T A T G C A G C T C T A G
p-value:1e-6
log p-value:-1.548e+01
Information Content per bp:1.789
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.59%
Number of Background Sequences with motif331.7
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets46.1 +/- 26.9bp
Average Position of motif in Background51.2 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.76
Offset:2
Orientation:forward strand
Alignment:CRGAGGCCGA--
--GAGSCCGAGC
 A G T C C T G A A T C G C G T A A C T G A T C G A G T C G T A C A C T G C G T A A C G T A C G T
A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

Zfx/MA0146.2/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CRGAGGCCGA------
--CAGGCCNNGGCCNN
 A G T C C T G A A T C G C G T A A C T G A T C G A G T C G T A C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CRGAGGCCGA-
---AGGCCTNG
 A G T C C T G A A T C G C G T A A C T G A T C G A G T C G T A C A C T G C G T A A C G T
A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CRGAGGCCGA
-CTAGGCCT-
 A G T C C T G A A T C G C G T A A C T G A T C G A G T C G T A C A C T G C G T A
A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CRGAGGCCGA--
--ATGCCAGACN
 A G T C C T G A A T C G C G T A A C T G A T C G A G T C G T A C A C T G C G T A A C G T A C G T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CRGAGGCCGA-----
-----CCAGACRSVB
 A G T C C T G A A T C G C G T A A C T G A T C G A G T C G T A C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CRGAGGCCGA--
AGGTGHCAGACA
 A G T C C T G A A T C G C G T A A C T G A T C G A G T C G T A C A C T G C G T A A C G T A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CRGAGGCCGA----
----TGCTGACTCA
 A G T C C T G A A T C G C G T A A C T G A T C G A G T C G T A C A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CRGAGGCCGA---
-----CCAGACAG
 A G T C C T G A A T C G C G T A A C T G A T C G A G T C G T A C A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CRGAGGCCGA-------
CAAATCCAGACATCACA
 A G T C C T G A A T C G C G T A A C T G A T C G A G T C G T A C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A