Information for 5-YGACCCAWGT (Motif 17)

A G C T A C T G G T C A A G T C A G T C A G T C C G T A C G A T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A C G T A C T G T C A G A C T G A C G T G T A C C T G A
p-value:1e-9
log p-value:-2.142e+01
Information Content per bp:1.863
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif135.6
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets46.5 +/- 23.9bp
Average Position of motif in Background46.7 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:YGACCCAWGT
TGACCTARTT
 A G C T A C T G G T C A A G T C A G T C A G T C C G T A C G A T A C T G A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

FOS::JUN/MA0099.2/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:YGACCCAWGT
TGACTCA---
 A G C T A C T G G T C A A G T C A G T C A G T C C G T A C G A T A C T G A C G T
A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T A C G T A C G T

JUND/MA0491.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--YGACCCAWGT
GGTGACTCATC-
 A C G T A C G T A G C T A C T G G T C A A G T C A G T C A G T C C G T A C G A T A C T G A C G T
C T A G T C A G A C G T A C T G C G T A A T G C A C G T G T A C C G T A A G C T T A G C A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-YGACCCAWGT---
TTGACCTANTTATN
 A C G T A G C T A C T G G T C A A G T C A G T C A G T C C G T A C G A T A C T G A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

FOSL1/MA0477.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--YGACCCAWGT
GGTGACTCATG-
 A C G T A C G T A G C T A C T G G T C A A G T C A G T C A G T C C G T A C G A T A C T G A C G T
C T A G T C A G A C G T A C T G C G T A T A G C A C G T G T A C C G T A A C G T T A C G A C G T

JDP2/MA0655.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-YGACCCAWGT
ATGACTCAT--
 A C G T A G C T A C T G G T C A A G T C A G T C A G T C C G T A C G A T A C T G A C G T
T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T A C G T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--YGACCCAWGT
CATGACTCATC-
 A C G T A C G T A G C T A C T G G T C A A G T C A G T C A G T C C G T A C G A T A C T G A C G T
T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C A C G T

FOS/MA0476.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--YGACCCAWGT
TGTGACTCATT-
 A C G T A C G T A G C T A C T G G T C A A G T C A G T C A G T C C G T A C G A T A C T G A C G T
C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T A C G T

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-YGACCCAWGT
ATGACTCATC-
 A C G T A G C T A C T G G T C A A G T C A G T C A G T C C G T A C G A T A C T G A C G T
T C G A A C G T C A T G G C T A T A G C C G A T G T A C G C T A A C G T A T G C A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----YGACCCAWGT--
NNCNTGACCCCGCTCT
 A C G T A C G T A C G T A C G T A G C T A C T G G T C A A G T C A G T C A G T C C G T A C G A T A C T G A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T