Information for 12-GCGCCGGTCT (Motif 13)

C T A G A G T C A C T G A G T C A G T C A C T G A C T G A C G T A G T C A C G T
Reverse Opposite:
C G T A C T A G C G T A A G T C A G T C A C T G A C T G A G T C A C T G A G T C
p-value:1e-6
log p-value:-1.608e+01
Information Content per bp:1.941
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif18.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets40.7 +/- 22.4bp
Average Position of motif in Background61.4 +/- 38.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GCGCCGGTCT
AGCGCGCC-----
 A C G T A C G T A C G T C T A G A G T C A C T G A G T C A G T C A C T G A C T G A C G T A G T C A C G T
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:2
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------GCGCCGGTCT
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C T G A G T C A G T C A C T G A C T G A C G T A G T C A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

TFCP2/MA0145.3/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCGCCGGTCT
AAACCGGTTT
 C T A G A G T C A C T G A G T C A G T C A C T G A C T G A C G T A G T C A C G T
C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------GCGCCGGTCT
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C T G A G T C A G T C A C T G A C T G A C G T A G T C A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCGCCGGTCT
GCTCCG----
 C T A G A G T C A C T G A G T C A G T C A C T G A C T G A C G T A G T C A C G T
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GCGCCGGTCT--
GGNGCGNCTGTTNNN
 A C G T A C G T A C G T C T A G A G T C A C T G A G T C A G T C A C T G A C T G A C G T A G T C A C G T A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCGCCGGTCT--
--VBSYGTCTGG
 C T A G A G T C A C T G A G T C A G T C A C T G A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

E2F2/MA0864.1/Jaspar

Match Rank:8
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GCGCCGGTCT
AAAATGGCGCCATTTT
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C T G A G T C A G T C A C T G A C T G A C G T A G T C A C G T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------GCGCCGGTCT-
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C T G A G T C A G T C A C T G A C T G A C G T A G T C A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCGCCGGTCT--
----CTGTCTGG
 C T A G A G T C A C T G A G T C A G T C A C T G A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G