Information for 3-CAGAACCACT (Motif 3)

G T A C G T C A C A T G T C G A G T C A A T G C G A T C T G C A A T G C A C G T
Reverse Opposite:
T G C A T A C G A C G T C T A G T A C G C A G T A G C T G T A C C A G T C A T G
p-value:1e-11
log p-value:-2.682e+01
Information Content per bp:1.672
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.79%
Number of Background Sequences with motif524.8
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets47.7 +/- 24.4bp
Average Position of motif in Background49.0 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CAGAACCACT---
---MRSCACTYAA
 G T A C G T C A C A T G T C G A G T C A A T G C G A T C T G C A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

ZNF354C/MA0130.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CAGAACCACT
---ATCCAC-
 G T A C G T C A C A T G T C G A G T C A A T G C G A T C T G C A A T G C A C G T
A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CAGAACCACT--
--AAACCACANN
 G T A C G T C A C A T G T C G A G T C A A T G C G A T C T G C A A T G C A C G T A C G T A C G T
A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CAGAACCACT---
---AAGCACTTAA
 G T A C G T C A C A T G T C G A G T C A A T G C G A T C T G C A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PH0004.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGAACCACT-------
CATAACCACTTAACAAC
 G T A C G T C A C A T G T C G A G T C A A T G C G A T C T G C A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CAGAACCACT-------
-TAAGCCACTTAACATT
 G T A C G T C A C A T G T C G A G T C A A T G C G A T C T G C A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CAGAACCACT----
----ACCACTTGAA
 G T A C G T C A C A T G T C G A G T C A A T G C G A T C T G C A A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PH0114.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CAGAACCACT-------
-TAAGCCACTTGAATTT
 G T A C G T C A C A T G T C G A G T C A A T G C G A T C T G C A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAGAACCACT-------
CTTAACCACTTAAGGAT
 G T A C G T C A C A T G T C G A G T C A A T G C G A T C T G C A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CAGAACCACT---
----ACCACTTAA
 G T A C G T C A C A T G T C G A G T C A A T G C G A T C T G C A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A