Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-400 | -9.231e+02 | 0.0000 | 742.0 | 83.28% | 7435.9 | 17.50% | motif file (matrix) |
svg |
2 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-383 | -8.824e+02 | 0.0000 | 774.0 | 86.87% | 9042.9 | 21.28% | motif file (matrix) |
svg |
3 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-357 | -8.236e+02 | 0.0000 | 703.0 | 78.90% | 7238.3 | 17.03% | motif file (matrix) |
svg |
4 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-346 | -7.988e+02 | 0.0000 | 806.0 | 90.46% | 11559.0 | 27.20% | motif file (matrix) |
svg |
5 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-240 | -5.529e+02 | 0.0000 | 406.0 | 45.57% | 2610.3 | 6.14% | motif file (matrix) |
svg |
6 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-232 | -5.359e+02 | 0.0000 | 554.0 | 62.18% | 6152.8 | 14.48% | motif file (matrix) |
svg |
7 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-229 | -5.292e+02 | 0.0000 | 511.0 | 57.35% | 5081.0 | 11.96% | motif file (matrix) |
svg |
8 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-221 | -5.099e+02 | 0.0000 | 496.0 | 55.67% | 4917.2 | 11.57% | motif file (matrix) |
svg |
9 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-187 | -4.312e+02 | 0.0000 | 523.0 | 58.70% | 6663.1 | 15.68% | motif file (matrix) |
svg |
10 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-173 | -3.990e+02 | 0.0000 | 419.0 | 47.03% | 4284.0 | 10.08% | motif file (matrix) |
svg |
11 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-172 | -3.962e+02 | 0.0000 | 367.0 | 41.19% | 3139.7 | 7.39% | motif file (matrix) |
svg |
12 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-164 | -3.784e+02 | 0.0000 | 411.0 | 46.13% | 4334.7 | 10.20% | motif file (matrix) |
svg |
13 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-151 | -3.486e+02 | 0.0000 | 432.0 | 48.48% | 5272.0 | 12.41% | motif file (matrix) |
svg |
14 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-148 | -3.427e+02 | 0.0000 | 382.0 | 42.87% | 4064.1 | 9.56% | motif file (matrix) |
svg |
15 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-111 | -2.564e+02 | 0.0000 | 287.0 | 32.21% | 2902.7 | 6.83% | motif file (matrix) |
svg |
16 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-110 | -2.554e+02 | 0.0000 | 378.0 | 42.42% | 5229.9 | 12.31% | motif file (matrix) |
svg |
17 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-104 | -2.408e+02 | 0.0000 | 386.0 | 43.32% | 5720.1 | 13.46% | motif file (matrix) |
svg |
18 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-99 | -2.299e+02 | 0.0000 | 700.0 | 78.56% | 18551.1 | 43.66% | motif file (matrix) |
svg |
19 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-60 | -1.387e+02 | 0.0000 | 423.0 | 47.47% | 9505.5 | 22.37% | motif file (matrix) |
svg |
20 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-34 | -7.889e+01 | 0.0000 | 125.0 | 14.03% | 1636.6 | 3.85% | motif file (matrix) |
svg |
21 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-33 | -7.609e+01 | 0.0000 | 69.0 | 7.74% | 502.1 | 1.18% | motif file (matrix) |
svg |
22 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-22 | -5.206e+01 | 0.0000 | 278.0 | 31.20% | 7450.0 | 17.53% | motif file (matrix) |
svg |
23 |
| RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-22 | -5.079e+01 | 0.0000 | 71.0 | 7.97% | 828.5 | 1.95% | motif file (matrix) |
svg |
24 |
| PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer | 1e-13 | -3.221e+01 | 0.0000 | 82.0 | 9.20% | 1499.1 | 3.53% | motif file (matrix) |
svg |
25 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-13 | -3.041e+01 | 0.0000 | 222.0 | 24.92% | 6498.0 | 15.29% | motif file (matrix) |
svg |
26 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-10 | -2.470e+01 | 0.0000 | 63.0 | 7.07% | 1159.3 | 2.73% | motif file (matrix) |
svg |
27 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-10 | -2.384e+01 | 0.0000 | 57.0 | 6.40% | 1010.2 | 2.38% | motif file (matrix) |
svg |
28 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-9 | -2.251e+01 | 0.0000 | 204.0 | 22.90% | 6325.5 | 14.89% | motif file (matrix) |
svg |
29 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-9 | -2.192e+01 | 0.0000 | 150.0 | 16.84% | 4264.3 | 10.04% | motif file (matrix) |
svg |
30 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-9 | -2.142e+01 | 0.0000 | 45.0 | 5.05% | 738.4 | 1.74% | motif file (matrix) |
svg |
31 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-9 | -2.093e+01 | 0.0000 | 108.0 | 12.12% | 2779.0 | 6.54% | motif file (matrix) |
svg |
32 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-8 | -1.947e+01 | 0.0000 | 99.0 | 11.11% | 2535.1 | 5.97% | motif file (matrix) |
svg |
33 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-8 | -1.933e+01 | 0.0000 | 112.0 | 12.57% | 3008.2 | 7.08% | motif file (matrix) |
svg |
34 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-8 | -1.867e+01 | 0.0000 | 47.0 | 5.27% | 867.1 | 2.04% | motif file (matrix) |
svg |
35 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-7 | -1.748e+01 | 0.0000 | 92.0 | 10.33% | 2390.2 | 5.63% | motif file (matrix) |
svg |
36 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-7 | -1.679e+01 | 0.0000 | 54.0 | 6.06% | 1140.1 | 2.68% | motif file (matrix) |
svg |
37 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-7 | -1.634e+01 | 0.0000 | 49.0 | 5.50% | 1000.1 | 2.35% | motif file (matrix) |
svg |
38 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-7 | -1.617e+01 | 0.0000 | 48.0 | 5.39% | 975.1 | 2.29% | motif file (matrix) |
svg |
39 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-6 | -1.598e+01 | 0.0000 | 101.0 | 11.34% | 2800.3 | 6.59% | motif file (matrix) |
svg |
40 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-6 | -1.426e+01 | 0.0000 | 56.0 | 6.29% | 1304.4 | 3.07% | motif file (matrix) |
svg |
41 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-6 | -1.407e+01 | 0.0000 | 43.0 | 4.83% | 893.4 | 2.10% | motif file (matrix) |
svg |
42 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-6 | -1.403e+01 | 0.0000 | 89.0 | 9.99% | 2477.1 | 5.83% | motif file (matrix) |
svg |
43 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-5 | -1.372e+01 | 0.0000 | 91.0 | 10.21% | 2570.1 | 6.05% | motif file (matrix) |
svg |
44 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-5 | -1.340e+01 | 0.0000 | 51.0 | 5.72% | 1175.3 | 2.77% | motif file (matrix) |
svg |
45 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-5 | -1.317e+01 | 0.0000 | 36.0 | 4.04% | 709.6 | 1.67% | motif file (matrix) |
svg |
46 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-5 | -1.266e+01 | 0.0000 | 37.0 | 4.15% | 756.3 | 1.78% | motif file (matrix) |
svg |
47 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-5 | -1.209e+01 | 0.0000 | 19.0 | 2.13% | 265.2 | 0.62% | motif file (matrix) |
svg |
48 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-5 | -1.198e+01 | 0.0000 | 49.0 | 5.50% | 1170.1 | 2.75% | motif file (matrix) |
svg |
49 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-5 | -1.185e+01 | 0.0001 | 117.0 | 13.13% | 3703.4 | 8.72% | motif file (matrix) |
svg |
50 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-5 | -1.168e+01 | 0.0001 | 99.0 | 11.11% | 3013.9 | 7.09% | motif file (matrix) |
svg |
51 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.161e+01 | 0.0001 | 45.0 | 5.05% | 1053.7 | 2.48% | motif file (matrix) |
svg |
52 |
| ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer | 1e-4 | -1.146e+01 | 0.0001 | 17.0 | 1.91% | 228.2 | 0.54% | motif file (matrix) |
svg |
53 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-4 | -1.132e+01 | 0.0001 | 35.0 | 3.93% | 741.8 | 1.75% | motif file (matrix) |
svg |
54 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-4 | -1.115e+01 | 0.0001 | 62.0 | 6.96% | 1665.3 | 3.92% | motif file (matrix) |
svg |
55 |
| Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.086e+01 | 0.0001 | 170.0 | 19.08% | 5962.7 | 14.03% | motif file (matrix) |
svg |
56 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-4 | -1.020e+01 | 0.0002 | 64.0 | 7.18% | 1794.6 | 4.22% | motif file (matrix) |
svg |
57 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-4 | -1.012e+01 | 0.0003 | 18.0 | 2.02% | 280.5 | 0.66% | motif file (matrix) |
svg |
58 |
| Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer | 1e-4 | -9.993e+00 | 0.0003 | 98.0 | 11.00% | 3108.0 | 7.31% | motif file (matrix) |
svg |
59 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-3 | -9.201e+00 | 0.0006 | 112.0 | 12.57% | 3739.5 | 8.80% | motif file (matrix) |
svg |
60 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-3 | -9.178e+00 | 0.0006 | 68.0 | 7.63% | 2011.4 | 4.73% | motif file (matrix) |
svg |
61 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-3 | -7.770e+00 | 0.0025 | 12.0 | 1.35% | 175.1 | 0.41% | motif file (matrix) |
svg |
62 |
| Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer | 1e-3 | -7.710e+00 | 0.0026 | 18.0 | 2.02% | 342.7 | 0.81% | motif file (matrix) |
svg |
63 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-3 | -6.991e+00 | 0.0053 | 117.0 | 13.13% | 4182.4 | 9.84% | motif file (matrix) |
svg |
64 |
| Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-3 | -6.985e+00 | 0.0053 | 23.0 | 2.58% | 523.4 | 1.23% | motif file (matrix) |
svg |
65 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-3 | -6.920e+00 | 0.0055 | 49.0 | 5.50% | 1453.4 | 3.42% | motif file (matrix) |
svg |
66 |
| BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-2 | -6.497e+00 | 0.0083 | 81.0 | 9.09% | 2749.6 | 6.47% | motif file (matrix) |
svg |
67 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-2 | -6.184e+00 | 0.0112 | 35.0 | 3.93% | 981.5 | 2.31% | motif file (matrix) |
svg |
68 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.016e+00 | 0.0131 | 23.0 | 2.58% | 565.6 | 1.33% | motif file (matrix) |
svg |
69 |
| ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.683e+00 | 0.0179 | 9.0 | 1.01% | 141.0 | 0.33% | motif file (matrix) |
svg |
70 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-2 | -5.491e+00 | 0.0214 | 27.0 | 3.03% | 732.9 | 1.72% | motif file (matrix) |
svg |
71 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-2 | -5.421e+00 | 0.0227 | 27.0 | 3.03% | 736.9 | 1.73% | motif file (matrix) |
svg |
72 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-2 | -5.213e+00 | 0.0275 | 152.0 | 17.06% | 5938.2 | 13.98% | motif file (matrix) |
svg |
73 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-2 | -5.051e+00 | 0.0319 | 20.0 | 2.24% | 508.9 | 1.20% | motif file (matrix) |
svg |
74 |
| HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-2 | -4.840e+00 | 0.0389 | 17.0 | 1.91% | 415.6 | 0.98% | motif file (matrix) |
svg |
75 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-2 | -4.821e+00 | 0.0391 | 30.0 | 3.37% | 884.8 | 2.08% | motif file (matrix) |
svg |
76 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -4.769e+00 | 0.0406 | 14.0 | 1.57% | 318.7 | 0.75% | motif file (matrix) |
svg |
77 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-2 | -4.669e+00 | 0.0443 | 21.0 | 2.36% | 563.8 | 1.33% | motif file (matrix) |
svg |