Information for 3-GCCAGGRTGYCAAGTG (Motif 3)

A T C G A G T C G A T C G T C A A C T G C T A G C T G A C G A T A C T G G A C T A T G C C G T A C T G A A C T G A C G T C T A G
Reverse Opposite:
A G T C C G T A G T A C G A C T A C G T A T C G C T G A A G T C C G T A G A C T A G T C G T A C A C G T C A T G T A C G T A G C
p-value:1e-13
log p-value:-3.131e+01
Information Content per bp:1.715
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif14.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.3 +/- 28.4bp
Average Position of motif in Background38.0 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.67
Offset:7
Orientation:forward strand
Alignment:GCCAGGRTGYCAAGTG
-------TGTCANYT-
 A T C G A G T C G A T C G T C A A C T G C T A G C T G A C G A T A C T G G A C T A T G C C G T A C T G A A C T G A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GCCAGGRTGYCAAGTG
-----GGTGCCAAGT-
 A T C G A G T C G A T C G T C A A C T G C T A G C T G A C G A T A C T G G A C T A T G C C G T A C T G A A C T G A C G T C T A G
A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GCCAGGRTGYCAAGTG
-----RHTGWCAR---
 A T C G A G T C G A T C G T C A A C T G C T A G C T G A C G A T A C T G G A C T A T G C C G T A C T G A A C T G A C G T C T A G
A C G T A C G T A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T

TFEB/MA0692.1/Jaspar

Match Rank:4
Score:0.63
Offset:8
Orientation:reverse strand
Alignment:GCCAGGRTGYCAAGTG--
--------GTCACGTGAT
 A T C G A G T C G A T C G T C A A C T G C T A G C T G A C G A T A C T G G A C T A T G C C G T A C T G A A C T G A C G T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T T G A C C G T A A G T C T C A G C A G T C A T G T C G A A G C T

USF2/MA0526.1/Jaspar

Match Rank:5
Score:0.62
Offset:8
Orientation:forward strand
Alignment:GCCAGGRTGYCAAGTG---
--------GTCATGTGACC
 A T C G A G T C G A T C G T C A A C T G C T A G C T G A C G A T A C T G G A C T A T G C C G T A C T G A A C T G A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C

Creb3l2/MA0608.1/Jaspar

Match Rank:6
Score:0.62
Offset:8
Orientation:forward strand
Alignment:GCCAGGRTGYCAAGTG-
--------GCCACGTGT
 A T C G A G T C G A T C G T C A A C T G C T A G C T G A C G A T A C T G G A C T A T G C C G T A C T G A A C T G A C G T C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T A C A T G C C G T A A G T C A C T G A C G T A T C G C A G T

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.61
Offset:8
Orientation:forward strand
Alignment:GCCAGGRTGYCAAGTG--
--------KCCACGTGAC
 A T C G A G T C G A T C G T C A A C T G C T A G C T G A C G A T A C T G G A C T A T G C C G T A C T G A A C T G A C G T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:GCCAGGRTGYCAAGTG--
--------NTCAAGTGGN
 A T C G A G T C G A T C G T C A A C T G C T A G C T G A C G A T A C T G G A C T A T G C C G T A C T G A A C T G A C G T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.61
Offset:8
Orientation:forward strand
Alignment:GCCAGGRTGYCAAGTG
--------GHCACGTG
 A T C G A G T C G A T C G T C A A C T G C T A G C T G A C G A T A C T G G A C T A T G C C G T A C T G A A C T G A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GCCAGGRTGYCAAGTG
------TTGCCAAG--
 A T C G A G T C G A T C G T C A A C T G C T A G C T G A C G A T A C T G G A C T A T G C C G T A C T G A A C T G A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T