Information for 1-AGGCAGSTGC (Motif 1)

C G T A C T A G T C A G A G T C C G T A A C T G A T C G A C G T A C T G A T G C
Reverse Opposite:
T A C G A G T C C G T A A T G C A G T C A C G T A C T G A G T C A G T C G C A T
p-value:1e-441
log p-value:-1.016e+03
Information Content per bp:1.786
Number of Target Sequences with motif693.0
Percentage of Target Sequences with motif77.78%
Number of Background Sequences with motif5173.9
Percentage of Background Sequences with motif12.18%
Average Position of motif in Targets51.6 +/- 20.5bp
Average Position of motif in Background49.8 +/- 41.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.37
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Myod1/MA0499.1/Jaspar

Match Rank:1
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--AGGCAGSTGC-
NGNGACAGCTGCN
 A C G T A C G T C G T A C T A G T C A G A G T C C G T A A C T G A T C G A C G T A C T G A T G C A C G T
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:AGGCAGSTGC--
SDGCAGGTGCNS
 C G T A C T A G T C A G A G T C C G T A A C T G A T C G A C G T A C T G A T G C A C G T A C G T
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Myog/MA0500.1/Jaspar

Match Rank:3
Score:0.91
Offset:1
Orientation:forward strand
Alignment:AGGCAGSTGC--
-GACAGCTGCAG
 C G T A C T A G T C A G A G T C C G T A A C T G A T C G A C G T A C T G A T G C A C G T A C G T
A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:4
Score:0.91
Offset:2
Orientation:reverse strand
Alignment:AGGCAGSTGC--
--GCAGCTGTNN
 C G T A C T A G T C A G A G T C C G T A A C T G A T C G A C G T A C T G A T G C A C G T A C G T
A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:5
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-AGGCAGSTGC-
NNVVCAGCTGBN
 A C G T C G T A C T A G T C A G A G T C C G T A A C T G A T C G A C G T A C T G A T G C A C G T
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

Ascl2/MA0816.1/Jaspar

Match Rank:6
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:AGGCAGSTGC-
-AGCAGCTGCT
 C G T A C T A G T C A G A G T C C G T A A C T G A T C G A C G T A C T G A T G C A C G T
A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

ID4/MA0824.1/Jaspar

Match Rank:7
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:AGGCAGSTGC-
-GACAGGTGTN
 C G T A C T A G T C A G A G T C C G T A A C T G A T C G A C G T A C T G A T G C A C G T
A C G T C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A

Tcf12/MA0521.1/Jaspar

Match Rank:8
Score:0.89
Offset:1
Orientation:forward strand
Alignment:AGGCAGSTGC--
-AACAGCTGCAG
 C G T A C T A G T C A G A G T C C G T A A C T G A T C G A C G T A C T G A T G C A C G T A C G T
A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G

TCF4/MA0830.1/Jaspar

Match Rank:9
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:AGGCAGSTGC-
-NNCAGGTGCG
 C G T A C T A G T C A G A G T C C G T A A C T G A T C G A C G T A C T G A T G C A C G T
A C G T G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

TCF3/MA0522.2/Jaspar

Match Rank:10
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:AGGCAGSTGC-
-NNCAGGTGTN
 C G T A C T A G T C A G A G T C C G T A A C T G A T C G A C G T A C T G A T G C A C G T
A C G T G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T