Information for 3-ACACACTAGT (Motif 9)

C G T A A T G C C G T A A G T C C G T A A G T C A G C T C T G A T C A G A C G T
Reverse Opposite:
C G T A A G T C A G C T C T G A C T A G A C G T A C T G A C G T A T C G A C G T
p-value:1e-9
log p-value:-2.110e+01
Information Content per bp:1.874
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.65%
Number of Background Sequences with motif42.3
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets45.9 +/- 17.5bp
Average Position of motif in Background54.3 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ACACACTAGT--
CTCACACAATGGCGC
 A C G T A C G T A C G T C G T A A T G C C G T A A G T C C G T A A G T C A G C T C T G A T C A G A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------ACACACTAGT
AGCGGCACACACGCAA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C C G T A A G T C C G T A A G T C A G C T C T G A T C A G A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ACACACTAGT--
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T C G T A A T G C C G T A A G T C C G T A A G T C A G C T C T G A T C A G A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

HOXA5/MA0158.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ACACACTAGT-
---CACTAATT
 C G T A A T G C C G T A A G T C C G T A A G T C A G C T C T G A T C A G A C G T A C G T
A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T

POL007.1_BREd/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ACACACTAGT
NANANAC----
 A C G T C G T A A T G C C G T A A G T C C G T A A G T C A G C T C T G A T C A G A C G T
T G C A T G C A T G A C T G C A G T C A T C G A G A T C A C G T A C G T A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---ACACACTAGT-
GCAAAACATTACTA
 A C G T A C G T A C G T C G T A A T G C C G T A A G T C C G T A A G T C A G C T C T G A T C A G A C G T A C G T
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:ACACACTAGT
RAACAATGGN
 C G T A A T G C C G T A A G T C C G T A A G T C A G C T C T G A T C A G A C G T
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ACACACTAGT
-GACAATGNN
 C G T A A T G C C G T A A G T C C G T A A G T C A G C T C T G A T C A G A C G T
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PB0181.1_Spdef_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----ACACACTAGT--
GATAACATCCTAGTAG
 A C G T A C G T A C G T A C G T C G T A A T G C C G T A A G T C C G T A A G T C A G C T C T G A T C A G A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

PH0040.1_Hmbox1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ACACACTAGT-------
GAAAACTAGTTAACATC
 C G T A A T G C C G T A A G T C C G T A A G T C A G C T C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C