Information for 2-CTGCAAAATGGGCTCT (Motif 3)

A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C T G A C T G A C T G A T G C A C G T A T G C A C G T
Reverse Opposite:
C G T A A T C G C G T A A T C G G T A C G T A C A G T C C G T A A C G T A C G T A C G T A C G T A C T G A G T C C G T A C T A G
p-value:1e-10
log p-value:-2.521e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.5 +/- 31.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTGCAAAATGGGCTCT
NNTNNACAATGGGANNN
 A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C T G A C T G A C T G A T G C A C G T A T G C A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTGCAAAATGGGCTCT
---CAAGATGGCGGC-
 A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C T G A C T G A C T G A T G C A C G T A T G C A C G T
A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTGCAAAATGGGCTCT
CAATTGCAAAAATAT----
 A C G T A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C T G A C T G A C T G A T G C A C G T A T G C A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CTGCAAAATGGGCTCT
----ACAAAGGNBCCT
 A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C T G A C T G A C T G A T G C A C G T A T G C A C G T
A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

NFATC2/MA0152.1/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CTGCAAAATGGGCTCT
-TGGAAAA--------
 A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C T G A C T G A C T G A T G C A C G T A T G C A C G T
A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTGCAAAATGGGCTCT
---CAAGATGGCGGC-
 A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C T G A C T G A C T G A T G C A C G T A T G C A C G T
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTGCAAAATGGGCTCT
AATGGAAAAT-------
 A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C T G A C T G A C T G A T G C A C G T A T G C A C G T
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CTGCAAAATGGGCTCT
NATGGAAAAN-------
 A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C T G A C T G A C T G A T G C A C G T A T G C A C G T
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CTGCAAAATGGGCTCT
--GAACAATGGN----
 A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C T G A C T G A C T G A T G C A C G T A T G C A C G T
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CTGCAAAATGGGCTCT
ATTGCACAATA------
 A C G T A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C T G A C T G A C T G A T G C A C G T A T G C A C G T
T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A A C G T A C G T A C G T A C G T A C G T A C G T