Information for 6-ATAAAAARAM (Motif 12)

C G T A C A G T T G C A G C T A G T C A G T C A G T C A C T A G G C T A T G C A
Reverse Opposite:
A C G T C G A T G A T C A C G T A C G T A C G T C G A T A C G T G T C A A C G T
p-value:1e-1
log p-value:-4.235e+00
Information Content per bp:1.671
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif5.73%
Number of Background Sequences with motif1248.2
Percentage of Background Sequences with motif2.66%
Average Position of motif in Targets49.2 +/- 33.3bp
Average Position of motif in Background50.5 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13/MA0909.1/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---ATAAAAARAM
CCAATAAAAA---
 A C G T A C G T A C G T C G T A C A G T T G C A G C T A G T C A G T C A G T C A C T A G G C T A T G C A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----ATAAAAARAM---
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T A C G T C G T A C A G T T G C A G C T A G T C A G T C A G T C A C T A G G C T A T G C A A C G T A C G T A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---ATAAAAARAM
CCAATAAAAA---
 A C G T A C G T A C G T C G T A C A G T T G C A G C T A G T C A G T C A G T C A C T A G G C T A T G C A
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:4
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------ATAAAAARAM
TACTGGAAAAAAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C A G T T G C A G C T A G T C A G T C A G T C A C T A G G C T A T G C A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:5
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---ATAAAAARAM
CCAATAAAAC---
 A C G T A C G T A C G T C G T A C A G T T G C A G C T A G T C A G T C A G T C A C T A G G C T A T G C A
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ATAAAAARAM
NCYAATAAAA----
 A C G T A C G T A C G T A C G T C G T A C A G T T G C A G C T A G T C A G T C A G T C A C T A G G C T A T G C A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---ATAAAAARAM
GTCATAAAAN---
 A C G T A C G T A C G T C G T A C A G T T G C A G C T A G T C A G T C A G T C A C T A G G C T A T G C A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----ATAAAAARAM
GGTAATAAAAA---
 A C G T A C G T A C G T A C G T C G T A C A G T T G C A G C T A G T C A G T C A G T C A C T A G G C T A T G C A
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------ATAAAAARAM
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C A G T T G C A G C T A G T C A G T C A G T C A C T A G G C T A T G C A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------ATAAAAARAM-
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C A G T T G C A G C T A G T C A G T C A G T C A C T A G G C T A T G C A A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T