Information for 1-CGGCTCGCTGGGCTCG (Motif 1)

A G T C A C T G A C T G A T G C A G C T G T A C A T C G A T G C A C G T A T C G A T C G A C T G A G T C A C G T A G T C A T C G
Reverse Opposite:
A T G C A C T G C G T A A C T G A G T C A T G C A T G C C G T A A T C G A T G C A C T G T C G A A T C G A G T C A G T C A C T G
p-value:1e-12
log p-value:-2.956e+01
Information Content per bp:1.859
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif8.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.2 +/- 18.7bp
Average Position of motif in Background62.7 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL001.1_MTE/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGGCTCGCTGGGCTCG---
NCGACCGCTCCGCTCGAAA
 A G T C A C T G A C T G A T G C A G C T G T A C A T C G A T G C A C G T A T C G A T C G A C T G A G T C A C G T A G T C A T C G A C G T A C G T A C G T
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGGCTCGCTGGGCTCG
-GGCGCGCT-------
 A G T C A C T G A C T G A T G C A G C T G T A C A T C G A T G C A C G T A T C G A T C G A C T G A G T C A C G T A G T C A T C G
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CGGCTCGCTGGGCTCG
----WDNCTGGGCA--
 A G T C A C T G A C T G A T G C A G C T G T A C A T C G A T G C A C G T A T C G A T C G A C T G A G T C A C G T A G T C A T C G
A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.51
Offset:10
Orientation:reverse strand
Alignment:CGGCTCGCTGGGCTCG
----------NGCTN-
 A G T C A C T G A C T G A T G C A G C T G T A C A T C G A T G C A C G T A T C G A T C G A C T G A G T C A C G T A G T C A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CGGCTCGCTGGGCTCG
NNTCCTGCTGTGNNN-
 A G T C A C T G A C T G A T G C A G C T G T A C A T C G A T G C A C G T A T C G A T C G A C T G A G T C A C G T A G T C A T C G
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CGGCTCGCTGGGCTCG
-TGCCCTNAGGGCA--
 A G T C A C T G A C T G A T G C A G C T G T A C A T C G A T G C A C G T A T C G A T C G A C T G A G T C A C G T A G T C A T C G
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CGGCTCGCTGGGCTCG
-TGCCCTGAGGGCA--
 A G T C A C T G A C T G A T G C A G C T G T A C A T C G A T G C A C G T A T C G A T C G A C T G A G T C A C G T A G T C A T C G
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CGGCTCGCTGGGCTCG
---CCTGCTGAGH---
 A G T C A C T G A C T G A T G C A G C T G T A C A T C G A T G C A C G T A T C G A T C G A C T G A G T C A C G T A G T C A T C G
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CGGCTCGCTGGGCTCG
-TGCCCTNAGGGCA--
 A G T C A C T G A C T G A T G C A G C T G T A C A T C G A T G C A C G T A T C G A T C G A C T G A G T C A C G T A G T C A T C G
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--CGGCTCGCTGGGCTCG
GGCCYCCTGCTGDGH---
 A C G T A C G T A G T C A C T G A C T G A T G C A G C T G T A C A T C G A T G C A C G T A T C G A T C G A C T G A G T C A C G T A G T C A T C G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T