Information for 13-TTAATTTCATAAATTT (Motif 29)

C A G T G A C T C G T A G C T A A C G T A C G T G A C T A G T C C G T A A C G T C G T A C G T A C G T A C G A T A C G T A C G T
Reverse Opposite:
C G T A C G T A G C T A A C G T A C G T A C G T G T C A A C G T C T A G C T G A C G T A G T C A C A G T C G A T C T G A G C T A
p-value:1e-6
log p-value:-1.570e+01
Information Content per bp:1.786
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.1 +/- 18.7bp
Average Position of motif in Background52.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0145.1_Mafb_2/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTAATTTCATAAATTT
-CAATTGCAAAAATAT
 C A G T G A C T C G T A G C T A A C G T A C G T G A C T A G T C C G T A A C G T C G T A C G T A C G T A C G A T A C G T A C G T
A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTAATTTCATAAATTT-
-AAAGCTCGTAAAATTT
 C A G T G A C T C G T A G C T A A C G T A C G T G A C T A G T C C G T A A C G T C G T A C G T A C G T A C G A T A C G T A C G T A C G T
A C G T G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0075.1_Hoxd10/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTAATTTCATAAATTT---
--AATGCAATAAAATTTAT
 C A G T G A C T C G T A G C T A A C G T A C G T G A C T A G T C C G T A A C G T C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0012.1_Cdx1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTAATTTCATAAATTT-
-TAAGGTAATAAAATTA
 C A G T G A C T C G T A G C T A A C G T A C G T G A C T A G T C C G T A A C G T C G T A C G T A C G T A C G A T A C G T A C G T A C G T
A C G T C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0056.1_Hoxa9/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TTAATTTCATAAATTT---
--ACGGCCATAAAATTAAT
 C A G T G A C T C G T A G C T A A C G T A C G T G A C T A G T C C G T A A C G T C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TTAATTTCATAAATTT-
-AAAGGTAATAAAATTT
 C A G T G A C T C G T A G C T A A C G T A C G T G A C T A G T C C G T A A C G T C G T A C G T A C G T A C G A T A C G T A C G T A C G T
A C G T C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTAATTTCATAAATTT--
--CTACCAATAAAATTCT
 C A G T G A C T C G T A G C T A A C G T A C G T G A C T A G T C C G T A A C G T C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TTAATTTCATAAATTT--
--TAGGTAATAAAATTCA
 C A G T G A C T C G T A G C T A A C G T A C G T G A C T A G T C C G T A A C G T C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TTAATTTCATAAATTT
----NGYCATAAAWCH
 C A G T G A C T C G T A G C T A A C G T A C G T G A C T A G T C C G T A A C G T C G T A C G T A C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TTAATTTCATAAATTT
-----GTCATAAAAN-
 C A G T G A C T C G T A G C T A A C G T A C G T G A C T A G T C C G T A A C G T C G T A C G T A C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T