Information for 3-GAGYGTCKSYGGCGCT (Motif 4)

A C T G C T G A A C T G G A C T A C T G A C G T A G T C A C G T A T G C A G C T C T A G A C T G A G T C A T C G A G T C A C G T
Reverse Opposite:
C G T A A C T G A T G C A C T G A G T C A G T C C T A G A T C G T G C A A C T G C G T A A G T C C T G A A G T C A G C T A G T C
p-value:1e-10
log p-value:-2.443e+01
Information Content per bp:1.879
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.2 +/- 12.9bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAGYGTCKSYGGCGCT
-ATTGCCTCAGGCAAT
 A C T G C T G A A C T G G A C T A C T G A C G T A G T C A C G T A T G C A G C T C T A G A C T G A G T C A T C G A G T C A C G T
A C G T C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GAGYGTCKSYGGCGCT
---TGCCTGAGGCN--
 A C T G C T G A A C T G G A C T A C T G A C G T A G T C A C G T A T G C A G C T C T A G A C T G A G T C A T C G A G T C A C G T
A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GAGYGTCKSYGGCGCT
---NGCCTGAGGCN--
 A C T G C T G A A C T G G A C T A C T G A C G T A G T C A C G T A T G C A G C T C T A G A C T G A G T C A T C G A G T C A C G T
A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:4
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GAGYGTCKSYGGCGCT
---NGCCTNAGGCN--
 A C T G C T G A A C T G G A C T A C T G A C G T A G T C A C G T A T G C A G C T C T A G A C T G A G T C A T C G A G T C A C G T
A C G T A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GAGYGTCKSYGGCGCT------
-----CCTTCGGCGCCAAAAGG
 A C T G C T G A A C T G G A C T A C T G A C G T A G T C A C G T A T G C A G C T C T A G A C T G A G T C A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.48
Offset:-3
Orientation:reverse strand
Alignment:---GAGYGTCKSYGGCGCT
CTTGAGTGGCT--------
 A C G T A C G T A C G T A C T G C T G A A C T G G A C T A C T G A C G T A G T C A C G T A T G C A G C T C T A G A C T G A G T C A T C G A G T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:7
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:GAGYGTCKSYGGCGCT-----
----NNNNTTGGCGCCGANNN
 A C T G C T G A A C T G G A C T A C T G A C G T A G T C A C G T A T G C A G C T C T A G A C T G A G T C A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--GAGYGTCKSYGGCGCT
TTGAGTGSTT--------
 A C G T A C G T A C T G C T G A A C T G G A C T A C T G A C G T A G T C A C G T A T G C A G C T C T A G A C T G A G T C A T C G A G T C A C G T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.47
Offset:1
Orientation:forward strand
Alignment:GAGYGTCKSYGGCGCT
-ATTGCCTGAGGCAAT
 A C T G C T G A A C T G G A C T A C T G A C G T A G T C A C G T A T G C A G C T C T A G A C T G A G T C A T C G A G T C A C G T
A C G T G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.47
Offset:0
Orientation:forward strand
Alignment:GAGYGTCKSYGGCGCT
VBSYGTCTGG------
 A C T G C T G A A C T G G A C T A C T G A C G T A G T C A C G T A T G C A G C T C T A G A C T G A G T C A T C G A G T C A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T