Information for 3-WGCCGAGGAGGBCACT (Motif 4)

G C T A T C A G T G A C A T G C C T A G T C G A A T C G A T C G C T G A T C A G A T C G A G C T A T G C T G C A A T G C A G C T
Reverse Opposite:
C T G A A T C G A C G T A T C G T C G A A T G C A G T C G A C T A T G C T A G C A G C T A G T C A T C G A C T G A G T C C G A T
p-value:1e-10
log p-value:-2.360e+01
Information Content per bp:1.680
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif94.2
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets35.2 +/- 19.6bp
Average Position of motif in Background52.6 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.61
Offset:7
Orientation:forward strand
Alignment:WGCCGAGGAGGBCACT
-------AAGGTCAC-
 G C T A T C A G T G A C A T G C C T A G T C G A A T C G A T C G C T G A T C A G A T C G A G C T A T G C T G C A A T G C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.57
Offset:6
Orientation:forward strand
Alignment:WGCCGAGGAGGBCACT
------TRAGGTCA--
 G C T A T C A G T G A C A T G C C T A G T C G A A T C G A T C G C T G A T C A G A T C G A G C T A T G C T G C A A T G C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.55
Offset:6
Orientation:forward strand
Alignment:WGCCGAGGAGGBCACT
------AGRGGTCA--
 G C T A T C A G T G A C A T G C C T A G T C G A A T C G A T C G C T G A T C A G A T C G A G C T A T G C T G C A A T G C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.54
Offset:8
Orientation:forward strand
Alignment:WGCCGAGGAGGBCACT
--------AGGTCA--
 G C T A T C A G T G A C A T G C C T A G T C G A A T C G A T C G C T G A T C A G A T C G A G C T A T G C T G C A A T G C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:WGCCGAGGAGGBCACT---
----AGGGAAGTCATTTCT
 G C T A T C A G T G A C A T G C C T A G T C G A A T C G A T C G C T G A T C A G A T C G A G C T A T G C T G C A A T G C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.53
Offset:8
Orientation:forward strand
Alignment:WGCCGAGGAGGBCACT----
--------RGGGCACTAACY
 G C T A T C A G T G A C A T G C C T A G T C G A A T C G A T C G C T G A T C A G A T C G A G C T A T G C T G C A A T G C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

PB0199.1_Zfp161_2/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:WGCCGAGGAGGBCACT
-GCCGCGCAGTGCGT-
 G C T A T C A G T G A C A T G C C T A G T C G A A T C G A T C G C T G A T C A G A T C G A G C T A T G C T G C A A T G C A G C T
A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:WGCCGAGGAGGBCACT
----ATCAAGGTCA--
 G C T A T C A G T G A C A T G C C T A G T C G A A T C G A T C G C T G A T C A G A T C G A G C T A T G C T G C A A T G C A G C T
A C G T A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:WGCCGAGGAGGBCACT
----AAYTAGGTCA--
 G C T A T C A G T G A C A T G C C T A G T C G A A T C G A T C G C T G A T C A G A T C G A G C T A T G C T G C A A T G C A G C T
A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.51
Offset:9
Orientation:forward strand
Alignment:WGCCGAGGAGGBCACT---
---------AASCACTCAA
 G C T A T C A G T G A C A T G C C T A G T C G A A T C G A T C G C T G A T C A G A T C G A G C T A T G C T G C A A T G C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A