Information for 9-CTCTGGTCACTCCGGT (Motif 19)

A G T C A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C A C T G A C T G C G T A A C T G A C G T A C T G C G T A A G T C A G T C C G T A A C T G C G T A A C T G
p-value:1e-7
log p-value:-1.641e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.8 +/- 15.6bp
Average Position of motif in Background54.2 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CTCTGGTCACTCCGGT
----AGTCACGC----
 A G T C A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C T G A C G T
A C G T A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CTCTGGTCACTCCGGT
CGCGCCGGGTCACGTA---
 A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C T G A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CTCTGGTCACTCCGGT
---AGGTCA-------
 A G T C A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C T G A C G T
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CTCTGGTCACTCCGGT
GCTGTGGTTT-------
 A C G T A G T C A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C T G A C G T
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CTCTGGTCACTCCGGT-
--NNGGCCACGCCTTTN
 A G T C A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C T G A C G T A C G T
A C G T A C G T G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CTCTGGTCACTCCGGT
CTGTGGTTTN------
 A G T C A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C T G A C G T
G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CTCTGGTCACTCCGGT
WDNCTGGGCA-------
 A C G T A G T C A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C T G A C G T
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:8
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CTCTGGTCACTCCGGT--
VAAACYKGTHWAACMRGTTT
 A C G T A C G T A G T C A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C T G A C G T A C G T A C G T
T C G A C T G A C T G A C G T A T A G C G A C T C A T G T C A G G C A T G C A T C G T A C T G A C T G A A G T C G T A C C T A G A T C G G A C T G A C T A G C T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:9
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----CTCTGGTCACTCCGGT
TCACCTCTGGGCAG------
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C T G A C G T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.48
Offset:1
Orientation:forward strand
Alignment:CTCTGGTCACTCCGGT
-TRAGGTCA-------
 A G T C A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C T G A C G T
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T