Information for 8-AGTAATATATCAC (Motif 12)

C G T A C T A G C G A T C T G A C T G A A G C T C T G A G A C T G T C A G A C T A G T C C G T A G T A C
Reverse Opposite:
C A T G C G A T T A C G C G T A A C G T C T G A G A C T C T G A A G C T G A C T C G T A A G T C C G A T
p-value:1e-8
log p-value:-2.037e+01
Information Content per bp:1.667
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif118.4
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets43.6 +/- 26.2bp
Average Position of motif in Background46.5 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0080.1_Tbp_1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGTAATATATCAC--
NANTTATATATAANGN
 A C G T C G T A C T A G C G A T C T G A C T G A A G C T C T G A G A C T G T C A G A C T A G T C C G T A G T A C A C G T A C G T
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTAATATATCAC---
GACAGAGATATCAGTGT
 A C G T C G T A C T A G C G A T C T G A C T G A A G C T C T G A G A C T G T C A G A C T A G T C C G T A G T A C A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGTAATATATCAC
GGTTAAACATTAA
 C G T A C T A G C G A T C T G A C T G A A G C T C T G A G A C T G T C A G A C T A G T C C G T A G T A C
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGTAATATATCAC
GGCCATAAATCAC
 C G T A C T A G C G A T C T G A C T G A A G C T C T G A G A C T G T C A G A C T A G T C C G T A G T A C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGTAATATATCAC
-GCCATAAATCA-
 C G T A C T A G C G A T C T G A C T G A A G C T C T G A G A C T G T C A G A C T A G T C C G T A G T A C
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

PH0038.1_Hlx/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGTAATATATCAC-
CCATAATTAATTACA
 A C G T C G T A C T A G C G A T C T G A C T G A A G C T C T G A G A C T G T C A G A C T A G T C C G T A G T A C A C G T
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGTAATATATCAC
TGAATTATGCAT---
 A C G T A C G T C G T A C T A G C G A T C T G A C T G A A G C T C T G A G A C T G T C A G A C T A G T C C G T A G T A C
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGTAATATATCAC
-GYCATCMATCAT
 C G T A C T A G C G A T C T G A C T G A A G C T C T G A G A C T G T C A G A C T A G T C C G T A G T A C
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGTAATATATCAC
ATGAATWATTCATGA-
 A C G T A C G T A C G T C G T A C T A G C G A T C T G A C T G A A G C T C T G A G A C T G T C A G A C T A G T C C G T A G T A C
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A A C G T

PAX7/MA0680.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGTAATATATCAC
--TAATCGATTA-
 C G T A C T A G C G A T C T G A C T G A A G C T C T G A G A C T G T C A G A C T A G T C C G T A G T A C
A C G T A C G T C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A A C G T