Information for 3-CAGGCTGCGAGAC (Motif 8)

A G T C C G T A A C T G A C T G G T A C A C G T A C T G A G T C A T C G C G T A C T A G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T A T G C C T A G A G T C C G T A A C T G A G T C A G T C A C G T A C T G
p-value:1e-10
log p-value:-2.358e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets82.7 +/- 5.3bp
Average Position of motif in Background40.0 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAGGCTGCGAGAC--
--AGGTGNCAGACAG
 A G T C C G T A A C T G A C T G G T A C A C G T A C T G A G T C A T C G C G T A C T A G C G T A A G T C A C G T A C G T
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CAGGCTGCGAGAC-
--AGGTGHCAGACA
 A G T C C G T A A C T G A C T G G T A C A C G T A C T G A G T C A T C G C G T A C T A G C G T A A G T C A C G T
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCTGCGAGAC
TCAGNGAGCGTGAC
 A C G T A G T C C G T A A C T G A C T G G T A C A C G T A C T G A G T C A T C G C G T A C T A G C G T A A G T C
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCTGCGAGAC
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G G T A C A C G T A C T G A G T C A T C G C G T A C T A G C G T A A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCTGCGAGAC
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G G T A C A C G T A C T G A G T C A T C G C G T A C T A G C G T A A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCTGCGAGAC
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G G T A C A C G T A C T G A G T C A T C G C G T A C T A G C G T A A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAGGCTGCGAGAC
CCTGCTGAGH---
 A G T C C G T A A C T G A C T G G T A C A C G T A C T G A G T C A T C G C G T A C T A G C G T A A G T C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCTGCGAGAC
TGGCAGNCTGCCAG--
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G G T A C A C G T A C T G A G T C A T C G C G T A C T A G C G T A A G T C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGGCTGCGAGAC
ANCAGGATGT-----
 A C G T A C G T A G T C C G T A A C T G A C T G G T A C A C G T A C T G A G T C A T C G C G T A C T A G C G T A A G T C
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCTGCGAGAC------
YCAGGCWCAGTACCAGGCTC
 A C G T A G T C C G T A A C T G A C T G G T A C A C G T A C T G A G T C A T C G C G T A C T A G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C