Information for 4-CCTCCTTAAA (Motif 16)

A T G C A G T C A G C T A G T C A T G C A G C T A C G T G T C A T C G A T G C A
Reverse Opposite:
A C G T A G C T A C G T G T C A C T G A A T C G A C T G C T G A T A C G A T C G
p-value:1e-8
log p-value:-1.924e+01
Information Content per bp:1.833
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif59.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets53.9 +/- 25.4bp
Average Position of motif in Background55.7 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCTCCTTAAA-
GCTCGTAAAAA
 A T G C A G T C A G C T A G T C A T G C A G C T A C G T G T C A T C G A T G C A A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

HOXC10/MA0905.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCTCCTTAAA-
-GTCGTAAAAT
 A T G C A G T C A G C T A G T C A T G C A G C T A C G T G T C A T C G A T G C A A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCTCCTTAAA---
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A T G C A G T C A G C T A G T C A T G C A G C T A C G T G T C A T C G A T G C A A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

POU6F2/MA0793.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCTCCTTAAA
AGCTCATTAT-
 A C G T A T G C A G T C A G C T A G T C A T G C A G C T A C G T G T C A T C G A T G C A
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCTCCTTAAA---
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A T G C A G T C A G C T A G T C A T G C A G C T A C G T G T C A T C G A T G C A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CCTCCTTAAA---
NNNACCTCATTATCNTN
 A C G T A C G T A C G T A C G T A T G C A G T C A G C T A G T C A T G C A G C T A C G T G T C A T C G A T G C A A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTCCTTAAA--
GGTCGTAAAATT
 A T G C A G T C A G C T A G T C A T G C A G C T A C G T G T C A T C G A T G C A A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCTCCTTAAA---
GCAACCTCATTATNNNN
 A C G T A C G T A C G T A C G T A T G C A G T C A G C T A G T C A T G C A G C T A C G T G T C A T C G A T G C A A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

HOXD11/MA0908.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCTCCTTAAA-
-GTCGTAAAAA
 A T G C A G T C A G C T A G T C A T G C A G C T A C G T G T C A T C G A T G C A A C G T
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

NKX6-1/MA0674.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCTCCTTAAA
-GTAATTAA-
 A T G C A G T C A G C T A G T C A T G C A G C T A C G T G T C A T C G A T G C A
A C G T T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T