Information for 22-AGCCAATAAC (Motif 24)

C G T A T C A G T G A C G T A C T G C A T C G A C A G T T G C A T C G A T G A C
Reverse Opposite:
A C T G A G C T A C G T G T C A A G C T A C G T C A T G A C T G A G T C G C A T
p-value:1e-19
log p-value:-4.582e+01
Information Content per bp:1.453
Number of Target Sequences with motif125.0
Percentage of Target Sequences with motif16.17%
Number of Background Sequences with motif17.6
Percentage of Background Sequences with motif6.72%
Average Position of motif in Targets50.6 +/- 28.7bp
Average Position of motif in Background61.5 +/- 35.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATAAC
ACTAGCCAATCA-
 A C G T A C G T A C G T C G T A T C A G T G A C G T A C T G C A T C G A C A G T T G C A T C G A T G A C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGCCAATAAC
AGCCAATCGG
 C G T A T C A G T G A C G T A C T G C A T C G A C A G T T G C A T C G A T G A C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AGCCAATAAC
TGCCAA----
 C G T A T C A G T G A C G T A C T G C A T C G A C A G T T G C A T C G A T G A C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATAAC
CGTGCCAAG---
 A C G T A C G T C G T A T C A G T G A C G T A C T G C A T C G A C A G T T G C A T C G A T G A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGCCAATAAC
GGCCATTAAC
 C G T A T C A G T G A C G T A C T G C A T C G A C A G T T G C A T C G A T G A C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AGCCAATAAC
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T C G T A T C A G T G A C G T A C T G C A T C G A C A G T T G C A T C G A T G A C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATAAC
BCAGACWA----
 A C G T A C G T C G T A T C A G T G A C G T A C T G C A T C G A C A G T T G C A T C G A T G A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGCCAATAAC--
--CCAATAAAAC
 C G T A T C A G T G A C G T A C T G C A T C G A C A G T T G C A T C G A T G A C A C G T A C G T
A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATAAC-----
AACCCAATAAAATTCG
 A C G T C G T A T C A G T G A C G T A C T G C A T C G A C A G T T G C A T C G A T G A C A C G T A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATAAC
CAGCC------
 A C G T C G T A T C A G T G A C G T A C T G C A T C G A C A G T T G C A T C G A T G A C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T