Information for 20-GCAGCVACTCAGA (Motif 27)

C A T G A G T C C G T A T A C G A G T C T C G A C G T A A T G C A C G T A G T C C T G A A C T G C T G A
Reverse Opposite:
A G C T A G T C A G C T A C T G C G T A A T C G A C G T A C G T A C T G A T G C A C G T A C T G G T A C
p-value:1e-8
log p-value:-1.922e+01
Information Content per bp:1.833
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets71.0 +/- 14.3bp
Average Position of motif in Background59.1 +/- 13.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCAGCVACTCAGA
--AGCCACTCAAG
 C A T G A G T C C G T A T A C G A G T C T C G A C G T A A T G C A C G T A G T C C T G A A C T G C T G A
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCAGCVACTCAGA
--AGCCAATCGG-
 C A T G A G T C C G T A T A C G A G T C T C G A C G T A A T G C A C G T A G T C C T G A A C T G C T G A
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCAGCVACTCAGA
AAATGGACCAATCAG-
 A C G T A C G T A C G T C A T G A G T C C G T A T A C G A G T C T C G A C G T A A T G C A C G T A G T C C T G A A C T G C T G A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCAGCVACTCAGA
ACTAGCCAATCA--
 A C G T C A T G A G T C C G T A T A C G A G T C T C G A C G T A A T G C A C G T A G T C C T G A A C T G C T G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCAGCVACTCAGA
SCTGTCAVTCAV-
 C A T G A G T C C G T A T A C G A G T C T C G A C G T A A T G C A C G T A G T C C T G A A C T G C T G A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCAGCVACTCAGA
--MRSCACTYAA-
 C A T G A G T C C G T A T A C G A G T C T C G A C G T A A T G C A C G T A G T C C T G A A C T G C T G A
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCAGCVACTCAGA
-CAGCC-------
 C A T G A G T C C G T A T A C G A G T C T C G A C G T A A T G C A C G T A G T C C T G A A C T G C T G A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCAGCVACTCAGA--
SCAGYCADGCATGAC
 C A T G A G T C C G T A T A C G A G T C T C G A C G T A A T G C A C G T A G T C C T G A A C T G C T G A A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCAGCVACTCAGA
NCTGTCAATCAN-
 C A T G A G T C C G T A T A C G A G T C T C G A C G T A A T G C A C G T A G T C C T G A A C T G C T G A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

NFYA/MA0060.2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCAGCVACTCAGA-----
TGGACCAATCAGCACTCT
 C A T G A G T C C G T A T A C G A G T C T C G A C G T A A T G C A C G T A G T C C T G A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T