Information for 19-AGDDGCCCTTTAA (Motif 21)

C G T A A C T G C T G A C G T A A C T G A G T C A G T C G A T C A G C T A C G T C A G T C G T A C G T A
Reverse Opposite:
A C G T A C G T G T C A G T C A C T G A C T A G A C T G A C T G A G T C G C A T G A C T A G T C A C G T
p-value:1e-9
log p-value:-2.260e+01
Information Content per bp:1.799
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets63.2 +/- 18.3bp
Average Position of motif in Background52.1 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Esrra/MA0592.2/Jaspar

Match Rank:1
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGDDGCCCTTTAA
--ATGACCTTGAA
 C G T A A C T G C T G A C G T A A C T G A G T C A G T C G A T C A G C T A C G T C A G T C G T A C G T A
A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGDDGCCCTTTAA---
-GCTGACCTTGAACTN
 C G T A A C T G C T G A C G T A A C T G A G T C A G T C G A T C A G C T A C G T C A G T C G T A C G T A A C G T A C G T A C G T
A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGDDGCCCTTTAA-
----NGCAATTAAA
 C G T A A C T G C T G A C G T A A C T G A G T C A G T C G A T C A G C T A C G T C A G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGDDGCCCTTTAA----
-----CCTTTTATAGNC
 C G T A A C T G C T G A C G T A A C T G A G T C A G T C G A T C A G C T A C G T C A G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGDDGCCCTTTAA----
CTTAACCACTTAAGGAT
 C G T A A C T G C T G A C G T A A C T G A G T C A G T C G A T C A G C T A C G T C A G T C G T A C G T A A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGDDGCCCTTTAA
---TGACCTTGAN
 C G T A A C T G C T G A C G T A A C T G A G T C A G T C G A T C A G C T A C G T C A G T C G T A C G T A
A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:7
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AGDDGCCCTTTAA--
-----CCTTTGAWGT
 C G T A A C T G C T G A C G T A A C T G A G T C A G T C G A T C A G C T A C G T C A G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGDDGCCCTTTAA--
---TGACCTTGACCT
 C G T A A C T G C T G A C G T A A C T G A G T C A G T C G A T C A G C T A C G T C A G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

PH0115.1_Nkx2-6/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGDDGCCCTTTAA----
-TAAGCCACTTAACATT
 C G T A A C T G C T G A C G T A A C T G A G T C A G T C G A T C A G C T A C G T C A G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:AGDDGCCCTTTAA--
-----CCTTTGATGT
 C G T A A C T G C T G A C G T A A C T G A G T C A G T C G A T C A G C T A C G T C A G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T