Information for 4-GTCCAATCAG (Motif 6)

A C T G G C A T A T G C G T A C T C G A G C T A G A C T A G T C T C G A T C A G
Reverse Opposite:
A G T C A G C T T C A G C T G A C A G T A G C T A C T G T A C G C G T A A G T C
p-value:1e-14
log p-value:-3.452e+01
Information Content per bp:1.664
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.26%
Number of Background Sequences with motif401.4
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets44.5 +/- 28.3bp
Average Position of motif in Background49.2 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----GTCCAATCAG
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T A C T G G C A T A T G C G T A C T C G A G C T A G A C T A G T C T C G A T C A G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFYA/MA0060.2/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--GTCCAATCAG------
TGGACCAATCAGCACTCT
 A C G T A C G T A C T G G C A T A T G C G T A C T C G A G C T A G A C T A G T C T C G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GTCCAATCAG
AGCCAATCGG
 A C T G G C A T A T G C G T A C T C G A G C T A G A C T A G T C T C G A T C A G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.77
Offset:2
Orientation:forward strand
Alignment:GTCCAATCAG
--CCAATCAA
 A C T G G C A T A T G C G T A C T C G A G C T A G A C T A G T C T C G A T C A G
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---GTCCAATCAG
ACTAGCCAATCA-
 A C G T A C G T A C G T A C T G G C A T A T G C G T A C T C G A G C T A G A C T A G T C T C G A T C A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------GTCCAATCAG
GGCAAAAGTCCAATAA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G C A T A T G C G T A C T C G A G C T A G A C T A G T C T C G A T C A G
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GTCCAATCAG
--CCAATTAA
 A C T G G C A T A T G C G T A C T C G A G C T A G A C T A G T C T C G A T C A G
A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GTCCAATCAG
--CCAATTAG
 A C T G G C A T A T G C G T A C T C G A G C T A G A C T A G T C T C G A T C A G
A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

PH0107.1_Msx2/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GTCCAATCAG----
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T A C T G G C A T A T G C G T A C T C G A G C T A G A C T A G T C T C G A T C A G A C G T A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

EN2/MA0642.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GTCCAATCAG-
-CCCAATTAGC
 A C T G G C A T A T G C G T A C T C G A G C T A G A C T A G T C T C G A T C A G A C G T
A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C