Information for 2-AACCAATCGC (Motif 3)

T C G A T C G A A T G C A G T C T G C A G T C A A G C T T A G C C T A G T A G C
Reverse Opposite:
A T C G G A T C A T C G T C G A C A G T A C G T T C A G T A C G A G C T A G C T
p-value:1e-19
log p-value:-4.461e+01
Information Content per bp:1.660
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif7.98%
Number of Background Sequences with motif1045.4
Percentage of Background Sequences with motif2.28%
Average Position of motif in Targets49.0 +/- 23.9bp
Average Position of motif in Background49.1 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AACCAATCGC
AGCCAATCGG
 T C G A T C G A A T G C A G T C T G C A G T C A A G C T T A G C C T A G T A G C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---AACCAATCGC
ACTAGCCAATCA-
 A C G T A C G T A C G T T C G A T C G A A T G C A G T C T G C A G T C A A G C T T A G C C T A G T A G C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----AACCAATCGC
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T T C G A T C G A A T G C A G T C T G C A G T C A A G C T T A G C C T A G T A G C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AACCAATCGC------
TGGACCAATCAGCACTCT
 A C G T A C G T T C G A T C G A A T G C A G T C T G C A G T C A A G C T T A G C C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AACCAATCGC---
GAAGATCAATCACTAA
 A C G T A C G T A C G T T C G A T C G A A T G C A G T C T G C A G T C A A G C T T A G C C T A G T A G C A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AACCAATCGC
GAACAATGG-
 T C G A T C G A A T G C A G T C T G C A G T C A A G C T T A G C C T A G T A G C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AACCAATCGC--
--CAAATCACTG
 T C G A T C G A A T G C A G T C T G C A G T C A A G C T T A G C C T A G T A G C A C G T A C G T
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AACCAATCGC
HNRAATCAAT---
 A C G T A C G T A C G T T C G A T C G A A T G C A G T C T G C A G T C A A G C T T A G C C T A G T A G C
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AACCAATCGC-----
CGACCCAATCAACGGTG
 A C G T A C G T T C G A T C G A A T G C A G T C T G C A G T C A A G C T T A G C C T A G T A G C A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AACCAATCGC---
GAAGATCAATCACTTA
 A C G T A C G T A C G T T C G A T C G A A T G C A G T C T G C A G T C A A G C T T A G C C T A G T A G C A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A