Motif 2

Information for 1-VACCCCGCCCYTT (Motif 2)

Reverse Opposite:

p-value:	1e-20
log p-value:	-4.807e+01
Information Content per bp:	1.673
Number of Target Sequences with motif	107.0
Percentage of Target Sequences with motif	11.38%
Number of Background Sequences with motif	1830.0
Percentage of Background Sequences with motif	4.00%
Average Position of motif in Targets	50.1 +/- 25.7bp
Average Position of motif in Background	47.4 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)	-0.4
Multiplicity (# of sites on avg that occur together)	1.11
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

PB0039.1_Klf7_1/Jaspar

Match Rank:	1
Score:	0.93
Offset:	-2
Orientation:	forward strand
Alignment:	--VACCCCGCCCYTT- TCGACCCCGCCCCTAT

POL003.1_GC-box/Jaspar

Match Rank:	2
Score:	0.89
Offset:	-1
Orientation:	reverse strand
Alignment:	-VACCCCGCCCYTT NAGCCCCGCCCCCN

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:	3
Score:	0.89
Offset:	-1
Orientation:	forward strand
Alignment:	-VACCCCGCCCYTT- NRGCCCCRCCCHBNN

KLF5/MA0599.1/Jaspar

Match Rank:	4
Score:	0.89
Offset:	1
Orientation:	forward strand
Alignment:	VACCCCGCCCYTT -GCCCCGCCCC--

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:	5
Score:	0.87
Offset:	1
Orientation:	reverse strand
Alignment:	VACCCCGCCCYTT -GCCMCGCCCMCY

Klf4/MA0039.2/Jaspar

Match Rank:	6
Score:	0.87
Offset:	1
Orientation:	reverse strand
Alignment:	VACCCCGCCCYTT -GCCCCACCCA--

SP1/MA0079.3/Jaspar

Match Rank:	7
Score:	0.87
Offset:	1
Orientation:	forward strand
Alignment:	VACCCCGCCCYTT -GCCCCGCCCCC-

Sp1(Zf)/Promoter/Homer

Match Rank:	8
Score:	0.86
Offset:	0
Orientation:	forward strand
Alignment:	VACCCCGCCCYTT GGCCCCGCCCCC-

SP3/MA0746.1/Jaspar

Match Rank:	9
Score:	0.84
Offset:	1
Orientation:	forward strand
Alignment:	VACCCCGCCCYTT -GCCACGCCCCC-

SP2/MA0516.1/Jaspar

Match Rank:	10
Score:	0.84
Offset:	1
Orientation:	forward strand
Alignment:	VACCCCGCCCYTT--- -GCCCCGCCCCCTCCC