Information for 13-TTATAAAGCC (Motif 17)

A C G T G C A T C G T A C A G T C G T A C T G A C G T A A T C G A T G C A G T C
Reverse Opposite:
A C T G A T C G A T G C A C G T A G C T A C G T G T C A C G A T C G T A T C G A
p-value:1e-9
log p-value:-2.136e+01
Information Content per bp:1.845
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif47.1
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets36.8 +/- 18.2bp
Average Position of motif in Background34.9 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TTATAAAGCC
CCTTTTATAGNC
 A C G T A C G T A C G T G C A T C G T A C A G T C G T A C T G A C G T A A T C G A T G C A G T C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TTATAAAGCC
NGYCATAAAWCH
 A C G T A C G T A C G T G C A T C G T A C A G T C G T A C T G A C G T A A T C G A T G C A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTATAAAGCC-----
GTATAAAAGGCGGGG
 A C G T G C A T C G T A C A G T C G T A C T G A C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTATAAAGCC-----
GTATAAAAGGCGGGG
 A C G T G C A T C G T A C A G T C G T A C T G A C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTATAAAGCC
GCAATAAAA--
 A C G T A C G T G C A T C G T A C A G T C G T A C T G A C G T A A T C G A T G C A G T C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTATAAAGCC
GTCATAAAAN-
 A C G T A C G T G C A T C G T A C A G T C G T A C T G A C G T A A T C G A T G C A G T C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTATAAAGCC
GRTGMTRGAGCC
 A C G T A C G T A C G T G C A T C G T A C A G T C G T A C T G A C G T A A T C G A T G C A G T C
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTATAAAGCC
AAGCCATAAAA--
 A C G T A C G T A C G T A C G T G C A T C G T A C A G T C G T A C T G A C G T A A T C G A T G C A G T C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTATAAAGCC
CCAATAAAAA-
 A C G T A C G T G C A T C G T A C A G T C G T A C T G A C G T A A T C G A T G C A G T C
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTATAAAGCC
NCYAATAAAA--
 A C G T A C G T A C G T G C A T C G T A C A G T C G T A C T G A C G T A A T C G A T G C A G T C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T