Information for 6-CCAGAGGGTA (Motif 9)

A G T C A G T C C G T A C T A G C G T A A T C G T A C G C T A G A C G T C G T A
Reverse Opposite:
A C G T T G C A A G T C A T G C T A G C A C G T A G T C A C G T A C T G A C T G
p-value:1e-10
log p-value:-2.345e+01
Information Content per bp:1.856
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.48%
Number of Background Sequences with motif188.2
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets48.9 +/- 25.0bp
Average Position of motif in Background48.7 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCAGAGGGTA
ATGCCAGACN---
 A C G T A C G T A C G T A G T C A G T C C G T A C T A G C G T A A T C G T A C G C T A G A C G T C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCAGAGGGTA-
GCCTCAGGGCAT
 A C G T A G T C A G T C C G T A C T A G C G T A A T C G T A C G C T A G A C G T C G T A A C G T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCAGAGGGTA---
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T A G C G T A A T C G T A C G C T A G A C G T C G T A A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCAGAGGGTA--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T A G C G T A A T C G T A C G C T A G A C G T C G T A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCAGAGGGTA
TCCAGATGTT-
 A C G T A G T C A G T C C G T A C T A G C G T A A T C G T A C G C T A G A C G T C G T A
A C G T T G A C A G T C C G T A A T C G G T C A A C G T A T C G A G C T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCAGAGGGTA
CCAGACAG--
 A G T C A G T C C G T A C T A G C G T A A T C G T A C G C T A G A C G T C G T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCAGAGGGTA
AACAGATGGT-
 A C G T A G T C A G T C C G T A C T A G C G T A A T C G T A C G C T A G A C G T C G T A
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCAGAGGGTA
AACAGATGGC-
 A C G T A G T C A G T C C G T A C T A G C G T A A T C G T A C G C T A G A C G T C G T A
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCAGAGGGTA-
SCCTSAGGSCAW
 A C G T A G T C A G T C C G T A C T A G C G T A A T C G T A C G C T A G A C G T C G T A A C G T
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCAGAGGGTA-
AACAGATGGTCN
 A C G T A G T C A G T C C G T A C T A G C G T A A T C G T A C G C T A G A C G T C G T A A C G T
C G T A T G C A G T A C C G T A A C T G T G C A A C G T A T C G A C T G G A C T A T G C C A T G