Information for 11-VAACAGACAGCHGGGA (Motif 13)

T A C G C T G A C G T A A G T C C G T A A T C G C G T A A G T C G T C A A T C G A G T C G A C T A C T G A C T G A C T G C G T A
Reverse Opposite:
C G A T A G T C A G T C G T A C C G T A A C T G A T G C A C G T A C T G A C G T A T G C A C G T A C T G A C G T A G C T A C G T
p-value:1e-11
log p-value:-2.726e+01
Information Content per bp:1.799
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets70.3 +/- 17.2bp
Average Position of motif in Background81.6 +/- 8.9bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.61
Offset:5
Orientation:forward strand
Alignment:VAACAGACAGCHGGGA-
-----CACAGCAGGGGG
 T A C G C T G A C G T A A G T C C G T A A T C G C G T A A G T C G T C A A T C G A G T C G A C T A C T G A C T G A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:VAACAGACAGCHGGGA
--CCAGACRSVB----
 T A C G C T G A C G T A A G T C C G T A A T C G C G T A A G T C G T C A A T C G A G T C G A C T A C T G A C T G A C T G C G T A
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:VAACAGACAGCHGGGA---
----DCHCAGCAGGRGGCC
 T A C G C T G A C G T A A G T C C G T A A T C G C G T A A G T C G T C A A T C G A G T C G A C T A C T G A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:VAACAGACAGCHGGGA
--CCAGACAG------
 T A C G C T G A C G T A A G T C C G T A A T C G C G T A A G T C G T C A A T C G A G T C G A C T A C T G A C T G A C T G C G T A
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:VAACAGACAGCHGGGA
GGACACACCCCC----
 T A C G C T G A C G T A A G T C C G T A A T C G C G T A A G T C G T C A A T C G A G T C G A C T A C T G A C T G A C T G C G T A
T C A G T A C G G T C A A G T C G T C A A G T C C T G A A G T C G T A C G A T C G T A C A G T C A C G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:VAACAGACAGCHGGGA
----NAACAGCTGG--
 T A C G C T G A C G T A A G T C C G T A A T C G C G T A A G T C G T C A A T C G A G T C G A C T A C T G A C T G A C T G C G T A
A C G T A C G T A C G T A C G T C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:VAACAGACAGCHGGGA-
--CCACACAGCAGGAGA
 T A C G C T G A C G T A A G T C C G T A A T C G C G T A A G T C G T C A A T C G A G T C G A C T A C T G A C T G A C T G C G T A A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:VAACAGACAGCHGGGA-
--CCACACAGCAGGAGA
 T A C G C T G A C G T A A G T C C G T A A T C G C G T A A G T C G T C A A T C G A G T C G A C T A C T G A C T G A C T G C G T A A C G T
A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:VAACAGACAGCHGGGA
----DCTCAGCAGG--
 T A C G C T G A C G T A A G T C C G T A A T C G C G T A A G T C G T C A A T C G A G T C G A C T A C T G A C T G A C T G C G T A
A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:VAACAGACAGCHGGGA-
--GAGCACAGCAGGACA
 T A C G C T G A C G T A A G T C C G T A A T C G C G T A A G T C G T C A A T C G A G T C G A C T A C T G A C T G A C T G C G T A A C G T
A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A