Information for 9-TGGTCAGAGTGCC (Motif 13)

A C G T A C T G A C T G A C G T A G T C C G T A A C T G C T G A C T A G A C G T A C T G A G T C G T A C
Reverse Opposite:
A C T G A C T G A G T C C G T A A G T C A G C T A G T C A C G T C T A G C G T A A G T C A G T C C G T A
p-value:1e-8
log p-value:-1.921e+01
Information Content per bp:1.930
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets71.5 +/- 16.7bp
Average Position of motif in Background14.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TGGTCAGAGTGCC---
-GGTCANNGTGACCTN
 A C G T A C T G A C T G A C G T A G T C C G T A A C T G C T G A C T A G A C G T A C T G A G T C G T A C A C G T A C G T A C G T
A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGGTCAGAGTGCC--
AGGTCACCCTGACCT
 A C G T A C T G A C T G A C G T A G T C C G T A A C T G C T G A C T A G A C G T A C T G A G T C G T A C A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGTCAGAGTGCC--
GGGGTCAAAGTCCAAT
 A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G C T G A C T A G A C G T A C T G A G T C G T A C A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

NR2C2/MA0504.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGGTCAGAGTGCC
AGGGGTCAGAGGTCA
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G C T G A C T A G A C G T A C T G A G T C G T A C
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

ESR1/MA0112.3/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGGTCAGAGTGCC---
CAGGTCACCGTGACCTT
 A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G C T G A C T A G A C G T A C T G A G T C G T A C A C G T A C G T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGGTCAGAGTGCC
GAGGTCAAAGGTCA
 A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G C T G A C T A G A C G T A C T G A G T C G T A C
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGGTCAGAGTGCC
AGGTCA-------
 A C G T A C T G A C T G A C G T A G T C C G T A A C T G C T G A C T A G A C G T A C T G A G T C G T A C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TGGTCAGAGTGCC
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G C T G A C T A G A C G T A C T G A G T C G T A C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

PPARG/MA0066.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGGTCAGAGTGCC-----
GTAGGTCACGGTGACCTACT
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G C T G A C T A G A C G T A C T G A G T C G T A C A C G T A C G T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TGGTCAGAGTGCC-
GTAGGTCACTGGGTCA
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G C T G A C T A G A C G T A C T G A G T C G T A C A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A