Information for 8-GCCACCCAGCCAA (Motif 12)

A C T G A G T C A G T C C G T A G T A C A G T C A G T C C G T A A C T G A T G C G T A C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A T C G A G T C A C G T A C T G A C T G C A T G A C G T A C T G A C T G G T A C
p-value:1e-8
log p-value:-1.937e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.4 +/- 23.9bp
Average Position of motif in Background31.2 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCCACCCAGCCAA
TGGCACCATGCCAA
 A C G T A C T G A G T C A G T C C G T A G T A C A G T C A G T C C G T A A C T G A T G C G T A C C G T A C G T A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GCCACCCAGCCAA
-----BCAGACWA
 A C T G A G T C A G T C C G T A G T A C A G T C A G T C C G T A A C T G A T G C G T A C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCCACCCAGCCAA
TGGCAGNCTGCCAG
 A C G T A C T G A G T C A G T C C G T A G T A C A G T C A G T C C G T A A C T G A T G C G T A C C G T A C G T A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCCACCCAGCCAA
ACTATGCCAACCTACC--
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A G T A C A G T C A G T C C G T A A C T G A T G C G T A C C G T A C G T A
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCACCCAGCCAA----
TACGCCCCGCCACTCTG
 A C T G A G T C A G T C C G T A G T A C A G T C A G T C C G T A A C T G A T G C G T A C C G T A C G T A A C G T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:GCCACCCAGCCAA
-------TGCCAA
 A C T G A G T C A G T C C G T A G T A C A G T C A G T C C G T A A C T G A T G C G T A C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCCACCCAGCCAA
GGACCACCCACG---
 A C G T A C G T A C T G A G T C A G T C C G T A G T A C A G T C A G T C C G T A A C T G A T G C G T A C C G T A C G T A
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCCACCCAGCCAA
--CRCCCACGCA-
 A C T G A G T C A G T C C G T A G T A C A G T C A G T C C G T A A C T G A T G C G T A C C G T A C G T A
A C G T A C G T G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCCACCCAGCCAA-----
---TCCCAGMCRAGCCCC
 A C T G A G T C A G T C C G T A G T A C A G T C A G T C C G T A A C T G A T G C G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GCCACCCAGCCAA-
-----CGTGCCAAG
 A C T G A G T C A G T C C G T A G T A C A G T C A G T C C G T A A C T G A T G C G T A C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G