Information for 2-TGGGCTCACSTGCACA (Motif 3)

A C G T A C T G A T C G A C T G A T G C A C G T T A G C C T G A A T G C A T C G C G A T A T C G A G T C C G T A A G T C G T C A
Reverse Opposite:
A C G T A C T G A C G T A C T G A T G C C G T A T A C G A T C G A G C T A C T G T C G A A T C G A G T C A T G C A G T C G T C A
p-value:1e-11
log p-value:-2.591e+01
Information Content per bp:1.764
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.12%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.0 +/- 16.9bp
Average Position of motif in Background32.9 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGGGCTCACSTGCACA
NTNNNGGGGTCANGNNN---
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A T G C A C G T T A G C C T G A A T G C A T C G C G A T A T C G A G T C C G T A A G T C G T C A
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TGGGCTCACSTGCACA-----
----CAGATGTGCACATACGT
 A C G T A C T G A T C G A C T G A T G C A C G T T A G C C T G A A T G C A T C G C G A T A T C G A G T C C G T A A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0104.1_Zscan4_1/Jaspar

Match Rank:3
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TGGGCTCACSTGCACA-----
----TACATGTGCACATAAAA
 A C G T A C T G A T C G A C T G A T G C A C G T T A G C C T G A A T G C A T C G C G A T A T C G A G T C C G T A A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

ZNF354C/MA0130.1/Jaspar

Match Rank:4
Score:0.54
Offset:9
Orientation:forward strand
Alignment:TGGGCTCACSTGCACA
---------ATCCAC-
 A C G T A C T G A T C G A C T G A T G C A C G T T A G C C T G A A T G C A T C G C G A T A T C G A G T C C G T A A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TGGGCTCACSTGCACA
---SNGCACCTGCHS-
 A C G T A C T G A T C G A C T G A T G C A C G T T A G C C T G A A T G C A T C G C G A T A T C G A G T C C G T A A G T C G T C A
A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----TGGGCTCACSTGCACA
CTCCAGGGGTCAATTGA---
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A T G C A C G T T A G C C T G A A T G C A T C G C G A T A T C G A G T C C G T A A G T C G T C A
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----TGGGCTCACSTGCACA
GGCGAGGGGTCAAGGGC---
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A T G C A C G T T A G C C T G A A T G C A T C G C G A T A T C G A G T C C G T A A G T C G T C A
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-TGGGCTCACSTGCACA
GTGGCGTGACNG-----
 A C G T A C G T A C T G A T C G A C T G A T G C A C G T T A G C C T G A A T G C A T C G C G A T A T C G A G T C C G T A A G T C G T C A
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G A C G T A C G T A C G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-TGGGCTCACSTGCACA
ATGGGGTGAT-------
 A C G T A C G T A C T G A T C G A C T G A T G C A C G T T A G C C T G A A T G C A T C G C G A T A T C G A G T C C G T A A G T C G T C A
T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:TGGGCTCACSTGCACA
-CCGGTCACGTGA---
 A C G T A C T G A T C G A C T G A T G C A C G T T A G C C T G A A T G C A T C G C G A T A T C G A G T C C G T A A G T C G T C A
A C G T A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A A C G T A C G T A C G T