Information for 7-CCTCARTCAA (Motif 18)

A T G C A G T C C G A T A G T C G T C A C T G A G A C T A T G C G T C A C T G A
Reverse Opposite:
A G C T C A G T A T C G C T G A A G C T C A G T C T A G C G T A A C T G A T C G
p-value:1e-6
log p-value:-1.609e+01
Information Content per bp:1.779
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif4.66%
Number of Background Sequences with motif261.3
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets59.2 +/- 31.6bp
Average Position of motif in Background49.9 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCTCARTCAA-
CCATCAATCAAA
 A C G T A T G C A G T C C G A T A G T C G T C A C T G A G A C T A T G C G T C A C T G A A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CCTCARTCAA
--CCAATCAA
 A T G C A G T C C G A T A G T C G T C A C T G A G A C T A T G C G T C A C T G A
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PH0026.1_Duxbl/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCTCARTCAA-----
CGACCCAATCAACGGTG
 A C G T A C G T A T G C A G T C C G A T A G T C G T C A C T G A G A C T A T G C G T C A C T G A A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCTCARTCAA
TCATCAATCA-
 A C G T A T G C A G T C C G A T A G T C G T C A C T G A G A C T A T G C G T C A C T G A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCTCARTCAA
CGCCTCAGGCA-
 A C G T A C G T A T G C A G T C C G A T A G T C G T C A C T G A G A C T A T G C G T C A C T G A
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCTCARTCAA
AGCCTCAGGCA-
 A C G T A C G T A T G C A G T C C G A T A G T C G T C A C T G A G A C T A T G C G T C A C T G A
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCTCARTCAA
AGCCTCAGGCA-
 A C G T A C G T A T G C A G T C C G A T A G T C G T C A C T G A G A C T A T G C G T C A C T G A
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCTCARTCAA
GCCACACCCA-
 A C G T A T G C A G T C C G A T A G T C G T C A C T G A G A C T A T G C G T C A C T G A
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCTCARTCAA
RGCCATYAATCA-
 A C G T A C G T A C G T A T G C A G T C C G A T A G T C G T C A C T G A G A C T A T G C G T C A C T G A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCTCARTCAA-
ATTGCCTGAGGCAAT
 A C G T A C G T A C G T A C G T A T G C A G T C C G A T A G T C G T C A C T G A G A C T A T G C G T C A C T G A A C G T
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T