Information for 13-RCGCGGRGCCAAT (Motif 11)

C T A G A T G C C T A G A T G C C T A G A C T G C T G A A C T G A G T C A T G C G T C A C G T A A G C T
Reverse Opposite:
C T G A A C G T A C G T A T C G A C T G A G T C A G C T A G T C A G T C A T C G A G T C A T C G A G T C
p-value:1e-10
log p-value:-2.377e+01
Information Content per bp:1.898
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.2 +/- 8.9bp
Average Position of motif in Background57.4 +/- 56.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.68
Offset:6
Orientation:forward strand
Alignment:RCGCGGRGCCAAT---
------AGCCAATCGG
 C T A G A T G C C T A G A T G C C T A G A C T G C T G A A C T G A G T C A T G C G T C A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:RCGCGGRGCCAAT--
---ACTAGCCAATCA
 C T A G A T G C C T A G A T G C C T A G A C T G C T G A A C T G A G T C A T G C G T C A C G T A A G C T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-RCGCGGRGCCAAT---
CCTTCGGCGCCAAAAGG
 A C G T C T A G A T G C C T A G A T G C C T A G A C T G C T G A A C T G A G T C A T G C G T C A C G T A A G C T A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

Sp1(Zf)/Promoter/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--RCGCGGRGCCAAT
GGGGGCGGGGCC---
 A C G T A C G T C T A G A T G C C T A G A T G C C T A G A C T G C T G A A C T G A G T C A T G C G T C A C G T A A G C T
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RCGCGGRGCCAAT---
AGCTCGGCGCCAAAAGC
 A C G T C T A G A T G C C T A G A T G C C T A G A C T G C T G A A C T G A G T C A T G C G T C A C G T A A G C T A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:RCGCGGRGCCAAT
---CGGAGC----
 C T A G A T G C C T A G A T G C C T A G A C T G C T G A A C T G A G T C A T G C G T C A C G T A A G C T
A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:RCGCGGRGCCAAT
----CGTGCCAAG
 C T A G A T G C C T A G A T G C C T A G A C T G C T G A A C T G A G T C A T G C G T C A C G T A A G C T
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:RCGCGGRGCCAAT
------TGCCAA-
 C T A G A T G C C T A G A T G C C T A G A C T G C T G A A C T G A G T C A T G C G T C A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--RCGCGGRGCCAAT
TGGCACCATGCCAA-
 A C G T A C G T C T A G A T G C C T A G A T G C C T A G A C T G C T G A A C T G A G T C A T G C G T C A C G T A A G C T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-RCGCGGRGCCAAT---
CTCCAGGGGTCAATTGA
 A C G T C T A G A T G C C T A G A T G C C T A G A C T G C T G A A C T G A G T C A T G C G T C A C G T A A G C T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A