Information for 13-AAATAAAAGC (Motif 17)

C T G A C G T A T C G A A C G T G C T A T G C A C T G A T G C A A T C G G T A C
Reverse Opposite:
C A T G A T G C A C G T A G C T A C G T C G A T T G C A A G C T A C G T A G C T
p-value:1e-9
log p-value:-2.176e+01
Information Content per bp:1.821
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif4.86%
Number of Background Sequences with motif726.0
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets55.4 +/- 23.3bp
Average Position of motif in Background51.3 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAATAAAAGC
NCYAATAAAA--
 A C G T A C G T C T G A C G T A T C G A A C G T G C T A T G C A C T G A T G C A A T C G G T A C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AAATAAAAGC--
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T C T G A C G T A T C G A A C G T G C T A T G C A C T G A T G C A A T C G G T A C A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AAATAAAAGC
GCAATAAAA--
 A C G T C T G A C G T A T C G A A C G T G C T A T G C A C T G A T G C A A T C G G T A C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AAATAAAAGC
CCAATAAAAA-
 A C G T C T G A C G T A T C G A A C G T G C T A T G C A C T G A T G C A A T C G G T A C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAATAAAAGC
CCAATAAAAA-
 A C G T C T G A C G T A T C G A A C G T G C T A T G C A C T G A T G C A A T C G G T A C
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAATAAAAGC
GAAASYGAAASY
 A C G T A C G T C T G A C G T A T C G A A C G T G C T A T G C A C T G A T G C A A T C G G T A C
C T A G T C G A C T G A C G T A T A C G G A C T T C A G T C G A G T C A T G C A T A C G A G C T

Gfi1b/MA0483.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAATAAAAGC-
AAATCACAGCA
 C T G A C G T A T C G A A C G T G C T A T G C A C T G A T G C A A T C G G T A C A C G T
T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAATAAAAGC
CCAATAAAAC-
 A C G T C T G A C G T A T C G A A C G T G C T A T G C A C T G A T G C A A T C G G T A C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AAATAAAAGC
AAAACAAAGG-
 A C G T C T G A C G T A T C G A A C G T G C T A T G C A C T G A T G C A A T C G G T A C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:10
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------AAATAAAAGC
TACTGGAAAAAAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A T C G A A C G T G C T A T G C A C T G A T G C A A T C G G T A C
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T