Information for 13-NNNAGGCTAANNH (Motif 27)

G A T C G T C A T C A G G T C A T A C G T A C G A G T C A C G T G C T A C G T A G C T A A C T G G A T C
Reverse Opposite:
C T A G T G A C C G A T G C A T C A G T T G C A T C A G A T G C A T G C C A G T A G T C C A G T C T A G
p-value:1e-8
log p-value:-2.038e+01
Information Content per bp:1.341
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.0 +/- 13.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0015.1_Crx/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:NNNAGGCTAANNH------
---AGGCTAATCCCCAANG
 G A T C G T C A T C A G G T C A T A C G T A C G A G T C A C G T G C T A C G T A G C T A A C T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:NNNAGGCTAANNH
----NGCTN----
 G A T C G T C A T C A G G T C A T A C G T A C G A G T C A C G T G C T A C G T A G C T A A C T G G A T C
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:NNNAGGCTAANNH
---NGGATTAN--
 G A T C G T C A T C A G G T C A T A C G T A C G A G T C A C G T G C T A C G T A G C T A A C T G G A T C
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:NNNAGGCTAANNH
-----GCTAATCC
 G A T C G T C A T C A G G T C A T A C G T A C G A G T C A C G T G C T A C G T A G C T A A C T G G A T C
A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

GSC/MA0648.1/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:forward strand
Alignment:NNNAGGCTAANNH--
-----GCTAATCCCC
 G A T C G T C A T C A G G T C A T A C G T A C G A G T C A C G T G C T A C G T A G C T A A C T G G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----NNNAGGCTAANNH
ATTGCCTGAGGCAAT---
 A C G T A C G T A C G T A C G T A C G T G A T C G T C A T C A G G T C A T A C G T A C G A G T C A C G T G C T A C G T A G C T A A C T G G A T C
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:NNNAGGCTAANNH
--TWGTCTGV---
 G A T C G T C A T C A G G T C A T A C G T A C G A G T C A C G T G C T A C G T A G C T A A C T G G A T C
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

PH0035.1_Gsc/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:NNNAGGCTAANNH-----
-AATCGTTAATCCCTTTA
 G A T C G T C A T C A G G T C A T A C G T A C G A G T C A C G T G C T A C G T A G C T A A C T G G A T C A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:NNNAGGCTAANNH--
-----NYTAATCCYB
 G A T C G T C A T C A G G T C A T A C G T A C G A G T C A C G T G C T A C G T A G C T A A C T G G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:NNNAGGCTAANNH-
------YTAATCCY
 G A T C G T C A T C A G G T C A T A C G T A C G A G T C A C G T G C T A C G T A G C T A A C T G G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C