Information for 5-GACCAAGGGA (Motif 9)

T C A G T C G A T G A C G A T C G T C A C T G A T A C G A C T G A C T G G C T A
Reverse Opposite:
C G A T A G T C G T A C A G T C A G C T A C G T C T A G A C T G A G C T A G T C
p-value:1e-10
log p-value:-2.486e+01
Information Content per bp:1.829
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif104.5
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets52.3 +/- 26.7bp
Average Position of motif in Background47.4 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GACCAAGGGA--
NTGCCCANNGGTNA
 A C G T A C G T T C A G T C G A T G A C G A T C G T C A C T G A T A C G A C T G A C T G G C T A A C G T A C G T
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GACCAAGGGA
AACAAAGG--
 T C A G T C G A T G A C G A T C G T C A C T G A T A C G A C T G A C T G G C T A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GACCAAGGGA
GAACAATGGN
 T C A G T C G A T G A C G A T C G T C A C T G A T A C G A C T G A C T G G C T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GACCAAGGGA---
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T T C A G T C G A T G A C G A T C G T C A C T G A T A C G A C T G A C T G G C T A A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GACCAAGGGA
AAAACAAAGG--
 A C G T A C G T T C A G T C G A T G A C G A T C G T C A C T G A T A C G A C T G A C T G G C T A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GACCAAGGGA--
CCGCCCAAGGGCAG
 A C G T A C G T T C A G T C G A T G A C G A T C G T C A C T G A T A C G A C T G A C T G G C T A A C G T A C G T
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

EBF1/MA0154.3/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GACCAAGGGA--
ATTCCCAAGGGAAT
 A C G T A C G T T C A G T C G A T G A C G A T C G T C A C T G A T A C G A C T G A C T G G C T A A C G T A C G T
C T G A A C G T G A C T A T G C A G T C A G T C G C T A C G T A T C A G T C A G C A T G C T G A G T C A G A C T

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GACCAAGGGA---
NANAGATCAAAGGGNNN
 A C G T A C G T A C G T A C G T T C A G T C G A T G A C G A T C G T C A C T G A T A C G A C T G A C T G G C T A A C G T A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GACCAAGGGA
GGAACAAAGR-
 A C G T T C A G T C G A T G A C G A T C G T C A C T G A T A C G A C T G A C T G G C T A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GACCAAGGGA---
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T T C A G T C G A T G A C G A T C G T C A C T G A T A C G A C T G A C T G G C T A A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A