Information for 2-AGGAACACACAGTVAG (Motif 7)

C G T A C T A G A C T G G T C A C T G A A T G C C T G A A G T C C G T A G T A C C T G A A C T G A C G T T A G C C G T A A C T G
Reverse Opposite:
A G T C G C A T A C T G G T C A T G A C A G C T A C T G C G A T C T A G A G C T A T C G A G C T A C G T A G T C A G T C G C A T
p-value:1e-10
log p-value:-2.522e+01
Information Content per bp:1.736
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.0 +/- 19.3bp
Average Position of motif in Background52.2 +/- 17.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGGAACACACAGTVAG
AGCGGCACACACGCAA--
 A C G T A C G T C G T A C T A G A C T G G T C A C T G A A T G C C T G A A G T C C G T A G T A C C T G A A C T G A C G T T A G C C G T A A C T G
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGGAACACACAGTVAG
CGAAGCACACAAAATA--
 A C G T A C G T C G T A C T A G A C T G G T C A C T G A A T G C C T G A A G T C C G T A G T A C C T G A A C T G A C G T T A G C C G T A A C T G
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGGAACACACAGTVAG
-GGACCACCCACG---
 C G T A C T A G A C T G G T C A C T G A A T G C C T G A A G T C C G T A G T A C C T G A A C T G A C G T T A G C C G T A A C T G
A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AGGAACACACAGTVAG
CCAGGAACAG--------
 A C G T A C G T C G T A C T A G A C T G G T C A C T G A A T G C C T G A A G T C C G T A G T A C C T G A A C T G A C G T T A G C C G T A A C T G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.52
Offset:4
Orientation:forward strand
Alignment:AGGAACACACAGTVAG---
----GAGCACAGCAGGACA
 C G T A C T A G A C T G G T C A C T G A A T G C C T G A A G T C C G T A G T A C C T G A A C T G A C G T T A G C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.50
Offset:7
Orientation:forward strand
Alignment:AGGAACACACAGTVAG-
-------AACAGGAAGT
 C G T A C T A G A C T G G T C A C T G A A T G C C T G A A G T C C G T A G T A C C T G A A C T G A C G T T A G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

FOXH1/MA0479.1/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AGGAACACACAGTVAG
TCCAATCCACA-----
 C G T A C T A G A C T G G T C A C T G A A T G C C T G A A G T C C G T A G T A C C T G A A C T G A C G T T A G C C G T A A C T G
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.50
Offset:-8
Orientation:reverse strand
Alignment:--------AGGAACACACAGTVAG-
CACAAGGGARWARGRCACCATGAGG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G A C T G G T C A C T G A A T G C C T G A A G T C C G T A G T A C C T G A A C T G A C G T T A G C C G T A A C T G A C G T
T A G C T G C A G T A C C T G A C T G A T A C G C T A G C T A G C T G A T C A G C G A T T C G A C T G A C T A G T C A G A G T C C G T A A G T C G T A C C T G A C G A T A C T G C T G A C T A G A T C G

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AGGAACACACAGTVAG
TGGGGCCCAC------
 C G T A C T A G A C T G G T C A C T G A A T G C C T G A A G T C C G T A G T A C C T G A A C T G A C G T T A G C C G T A A C T G
G A C T C T A G A C T G A C T G T A C G A G T C A G T C A G T C C T G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AGGAACACACAGTVAG
GCGACCACACTG----
 C G T A C T A G A C T G G T C A C T G A A T G C C T G A A G T C C G T A G T A C C T G A A C T G A C G T T A G C C G T A A C T G
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G A C G T A C G T A C G T A C G T