Information for 3-GCMYSTKTSTGCA (Motif 6)

C T A G T A G C G T C A G A T C T A C G A C G T A C G T A G C T A T C G A G C T A T C G A G T C C T G A
Reverse Opposite:
G A C T C T A G A T G C T C G A T A G C T C G A T G C A G T C A A T G C C T A G C A G T A T C G A G T C
p-value:1e-11
log p-value:-2.689e+01
Information Content per bp:1.613
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif7.42%
Number of Background Sequences with motif1324.9
Percentage of Background Sequences with motif2.89%
Average Position of motif in Targets48.7 +/- 26.1bp
Average Position of motif in Background49.6 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCMYSTKTSTGCA------
--NTNTATGTGCACATNNN
 C T A G T A G C G T C A G A T C T A C G A C G T A C G T A G C T A T C G A G C T A T C G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCMYSTKTSTGCA---
NNGCGTGTGTGCNGCN
 C T A G T A G C G T C A G A T C T A C G A C G T A C G T A G C T A T C G A G C T A T C G A G T C C T G A A C G T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0026.1_Gm397_1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCMYSTKTSTGCA------
--NNGTATGTGCACATNNN
 C T A G T A G C G T C A G A T C T A C G A C G T A C G T A G C T A T C G A G C T A T C G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

PB0145.1_Mafb_2/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCMYSTKTSTGCA----
--ANATTTTTGCAANTN
 C T A G T A G C G T C A G A T C T A C G A C G T A C G T A G C T A T C G A G C T A T C G A G T C C T G A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCMYSTKTSTGCA-------
---NSTGTTTRCWCAGBNNN
 C T A G T A G C G T C A G A T C T A C G A C G T A C G T A G C T A T C G A G C T A T C G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCMYSTKTSTGCA---
NNNNTTGTGTGCTTNN
 C T A G T A G C G T C A G A T C T A C G A C G T A C G T A G C T A T C G A G C T A T C G A G T C C T G A A C G T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCMYSTKTSTGCA---
-CCATTGTATGCAAAT
 C T A G T A G C G T C A G A T C T A C G A C G T A C G T A G C T A T C G A G C T A T C G A G T C C T G A A C G T A C G T A C G T
A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCMYSTKTSTGCA-
----TTGCGTGCVA
 C T A G T A G C G T C A G A T C T A C G A C G T A C G T A G C T A T C G A G C T A T C G A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GCMYSTKTSTGCA--
---SCTGTCARCACC
 C T A G T A G C G T C A G A T C T A C G A C G T A C G T A G C T A T C G A G C T A T C G A G T C C T G A A C G T A C G T
A C G T A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GCMYSTKTSTGCA
---TGAGTCAGCA
 C T A G T A G C G T C A G A T C T A C G A C G T A C G T A G C T A T C G A G C T A T C G A G T C C T G A
A C G T A C G T A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A