Information for 2-AGCAGCGKGGNCA (Motif 4)

G T C A C T A G A G T C G T C A A T C G A G T C A T C G A C T G A C T G A C T G G C T A A G T C C T G A
Reverse Opposite:
A G C T A C T G C G A T G T A C G T A C T G A C A T G C A C T G T A G C A C G T A C T G A G T C C A G T
p-value:1e-12
log p-value:-2.926e+01
Information Content per bp:1.748
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.71%
Number of Background Sequences with motif365.6
Percentage of Background Sequences with motif0.80%
Average Position of motif in Targets55.0 +/- 23.3bp
Average Position of motif in Background51.5 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGCAGCGKGGNCA-----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T G T C A C T A G A G T C G T C A A T C G A G T C A T C G A C T G A C T G A C T G G C T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGCAGCGKGGNCA-----
TCAGCACCATGGACAGCTCC
 A C G T A C G T G T C A C T A G A G T C G T C A A T C G A G T C A T C G A C T G A C T G A C T G G C T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGCGKGGNCA
DCTCAGCAGG----
 A C G T G T C A C T A G A G T C G T C A A T C G A G T C A T C G A C T G A C T G A C T G G C T A A G T C C T G A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGCAGCGKGGNCA----
-AGAGCGGGGTCAAGTA
 G T C A C T A G A G T C G T C A A T C G A G T C A T C G A C T G A C T G A C T G G C T A A G T C C T G A A C G T A C G T A C G T A C G T
A C G T G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

GLI2/MA0734.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGCAGCGKGGNCA-
--CAGTGTGGTCGC
 G T C A C T A G A G T C G T C A A T C G A G T C A T C G A C T G A C T G A C T G G C T A A G T C C T G A A C G T
A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGCAGCGKGGNCA----
-CGCGCCGGGTCACGTA
 G T C A C T A G A G T C G T C A A T C G A G T C A T C G A C T G A C T G A C T G G C T A A G T C C T G A A C G T A C G T A C G T A C G T
A C G T T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGCAGCGKGGNCA
NAACAGCTGG----
 A C G T G T C A C T A G A G T C G T C A A T C G A G T C A T C G A C T G A C T G A C T G G C T A A G T C C T G A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGCAGCGKGGNCA
--CAGCC------
 G T C A C T A G A G T C G T C A A T C G A G T C A T C G A C T G A C T G A C T G G C T A A G T C C T G A
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

EGR2/MA0472.2/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGCAGCGKGGNCA-
---TGCGTGGGCGT
 G T C A C T A G A G T C G T C A A T C G A G T C A T C G A C T G A C T G A C T G G C T A A G T C C T G A A C G T
A C G T A C G T A C G T G A C T T C A G G T A C T C A G A C G T T C A G A C T G T C A G G A T C T C A G C A G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGCAGCGKGGNCA
-----AGRGGTCA
 G T C A C T A G A G T C G T C A A T C G A G T C A T C G A C T G A C T G A C T G G C T A A G T C C T G A
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A