Information for 2-CCGGCAGGGG (Motif 3)

T A G C A G T C C T A G A C T G A G T C C G T A T C A G A T C G A C T G A C T G
Reverse Opposite:
G T A C A G T C T A G C A G T C G C A T A C T G T G A C G A T C A C T G A T C G
p-value:1e-12
log p-value:-2.956e+01
Information Content per bp:1.739
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif4.98%
Number of Background Sequences with motif632.9
Percentage of Background Sequences with motif1.38%
Average Position of motif in Targets52.0 +/- 25.6bp
Average Position of motif in Background49.1 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCAGGGG---
DCHCAGCAGGRGGCC
 A C G T A C G T T A G C A G T C C T A G A C T G A G T C C G T A T C A G A T C G A C T G A C T G A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCGGCAGGGG-
CACAGCAGGGGG
 A C G T T A G C A G T C C T A G A C T G A G T C C G T A T C A G A T C G A C T G A C T G A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ZIC4/MA0751.1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCAGGGG---
NCNCAGCGGGGGGTC
 A C G T A C G T T A G C A G T C C T A G A C T G A G T C C G T A T C A G A T C G A C T G A C T G A C G T A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCGGCAGGGG---------
GCCASCAGGGGGCGCYVNNG
 A C G T T A G C A G T C C T A G A C T G A G T C C G T A T C A G A T C G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCAGGGG---
NCGCAGCGGGGGGTC
 A C G T A C G T T A G C A G T C C T A G A C T G A G T C C G T A T C A G A T C G A C T G A C T G A C G T A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCGGCAGGGG---
CACAGCGGGGGGTC
 A C G T T A G C A G T C C T A G A C T G A G T C C G T A T C A G A T C G A C T G A C T G A C G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

INSM1/MA0155.1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCGGCAGGGG---
-TGTCAGGGGGCG
 T A G C A G T C C T A G A C T G A G T C C G T A T C A G A T C G A C T G A C T G A C G T A C G T A C G T
A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCGGCAGGGG
--GGGGGGGG
 T A G C A G T C C T A G A C T G A G T C C G T A T C A G A T C G A C T G A C T G
A C G T A C G T C T A G A C T G C T A G T C A G T C A G T A C G C T A G A C T G

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCGGCAGGGG---
CCCCCCCGGGGGGGT
 A C G T A C G T T A G C A G T C C T A G A C T G A G T C C G T A T C A G A T C G A C T G A C T G A C G T A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCGGCAGGGG---
CCCCCCCGGGGGGGT
 A C G T A C G T T A G C A G T C C T A G A C T G A G T C C G T A T C A G A T C G A C T G A C T G A C G T A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T