Information for 1-CGGGCTTTGG (Motif 2)

A T G C A C T G T A C G A C T G A G T C C G A T A C G T A C G T A C T G C T A G
Reverse Opposite:
A G T C A G T C T G C A G T C A C G T A A C T G T G A C A T G C G T A C A T C G
p-value:1e-13
log p-value:-3.063e+01
Information Content per bp:1.839
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.07%
Number of Background Sequences with motif234.6
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets49.1 +/- 29.4bp
Average Position of motif in Background51.5 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CGGGCTTTGG-----
TGGACTTTGNNCTCN
 A T G C A C T G T A C G A C T G A G T C C G A T A C G T A C G T A C T G C T A G A C G T A C G T A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGGGCTTTGG------
TGGACTTTGNNCTNTG
 A T G C A C T G T A C G A C T G A G T C C G A T A C G T A C G T A C T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CGGGCTTTGG--
NNATTGGACTTTNGNN
 A C G T A C G T A C G T A C G T A T G C A C T G T A C G A C T G A G T C C G A T A C G T A C G T A C T G C T A G A C G T A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGGGCTTTGG
NGGGATTA--
 A T G C A C T G T A C G A C T G A G T C C G A T A C G T A C G T A C T G C T A G
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CGGGCTTTGG---
---CCTTTGATGT
 A T G C A C T G T A C G A C T G A G T C C G A T A C G T A C G T A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CGGGCTTTGG
--NGCTN---
 A T G C A C T G T A C G A C T G A G T C C G A T A C G T A C G T A C T G C T A G
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGGGCTTTGG-
-TGACCTTGAN
 A T G C A C T G T A C G A C T G A G T C C G A T A C G T A C G T A C T G C T A G A C G T
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Hnf4a/MA0114.3/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CGGGCTTTGG----
ATTGGACTTTGACCCC
 A C G T A C G T A T G C A C T G T A C G A C T G A G T C C G A T A C G T A C G T A C T G C T A G A C G T A C G T A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CGGGCTTTGG--
------TTGGCA
 A T G C A C T G T A C G A C T G A G T C C G A T A C G T A C G T A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

RUNX1/MA0002.2/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CGGGCTTTGG---
--GTCTGTGGTTT
 A T G C A C T G T A C G A C T G A G T C C G A T A C G T A C G T A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T